miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 10722 1.09 0.002881
Target:  5'- cGAGGAUAAUCUGGGCAGCCAGAGCCAg -3'
miRNA:   3'- -CUCCUAUUAGACCCGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 149830 0.88 0.075478
Target:  5'- -cGGGUGGUgUGGGCGGCCAGGGCCu -3'
miRNA:   3'- cuCCUAUUAgACCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 127846 0.8 0.249942
Target:  5'- gGAGGGUGggCuUGGGCAGCCGGcguGCCAu -3'
miRNA:   3'- -CUCCUAUuaG-ACCCGUCGGUCu--CGGU- -5'
28921 3' -55.5 NC_006146.1 + 33339 0.74 0.518185
Target:  5'- -cGGGUGcUCcgGGGCAGCCGGguGGCCGc -3'
miRNA:   3'- cuCCUAUuAGa-CCCGUCGGUC--UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 77942 0.73 0.558464
Target:  5'- cGGGGGUcgcuguuuGGUCUGGGCcggAGCCGGuGGCCu -3'
miRNA:   3'- -CUCCUA--------UUAGACCCG---UCGGUC-UCGGu -5'
28921 3' -55.5 NC_006146.1 + 39084 0.72 0.609937
Target:  5'- -----cGGUCUGGGgaaGGCCAGGGCCAu -3'
miRNA:   3'- cuccuaUUAGACCCg--UCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 131483 0.71 0.641083
Target:  5'- cAGGugGGUCUGGGguGCCAGGGaUCGa -3'
miRNA:   3'- cUCCuaUUAGACCCguCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 102392 0.71 0.660789
Target:  5'- cGGGGAgcuggugguAUCUgucccugGGGCGGCCAaaGAGCCAu -3'
miRNA:   3'- -CUCCUau-------UAGA-------CCCGUCGGU--CUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 127392 0.71 0.661824
Target:  5'- gGAGGugucuUGGggCUGGGCcccgccGCCGGAGCCGg -3'
miRNA:   3'- -CUCCu----AUUa-GACCCGu-----CGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 143015 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 146093 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 149171 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 155327 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 152249 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 158406 0.71 0.672162
Target:  5'- cGGGGAgcggCUGGGauggggaAGCCGGAGuCCAg -3'
miRNA:   3'- -CUCCUauuaGACCCg------UCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 54225 0.7 0.696819
Target:  5'- cAGGAUGGggcgggagcagagccUCUGGGCGGCCccGGUCAg -3'
miRNA:   3'- cUCCUAUU---------------AGACCCGUCGGucUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 44022 0.7 0.702938
Target:  5'- cGGGGAgg----GGGCGGCCgAGGGCCc -3'
miRNA:   3'- -CUCCUauuagaCCCGUCGG-UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 34016 0.7 0.713086
Target:  5'- gGGGGggGGUCgGGGCAGgcgggcguggucCCGGGGCCu -3'
miRNA:   3'- -CUCCuaUUAGaCCCGUC------------GGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 49471 0.69 0.752873
Target:  5'- cGGGAUGGUgaGGGCcgcggugucGGCCAGGGgCGg -3'
miRNA:   3'- cUCCUAUUAgaCCCG---------UCGGUCUCgGU- -5'
28921 3' -55.5 NC_006146.1 + 26184 0.69 0.772148
Target:  5'- aGGGGAUuaGGUCggaggGGGCGGCCuGGGaaCCAa -3'
miRNA:   3'- -CUCCUA--UUAGa----CCCGUCGGuCUC--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.