miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 3250 0.69 0.790908
Target:  5'- gGGGGAUAGgggacCUGGGgacggcgcaGGCCAcGAGCCGg -3'
miRNA:   3'- -CUCCUAUUa----GACCCg--------UCGGU-CUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 4853 0.66 0.914451
Target:  5'- gGAGGggAAUagGGGCaggGGCgGGGGCCAc -3'
miRNA:   3'- -CUCCuaUUAgaCCCG---UCGgUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 10722 1.09 0.002881
Target:  5'- cGAGGAUAAUCUGGGCAGCCAGAGCCAg -3'
miRNA:   3'- -CUCCUAUUAGACCCGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 12862 0.67 0.851469
Target:  5'- uGGGGcgAggCUGGGUGGCUGGgcaGGCCGg -3'
miRNA:   3'- -CUCCuaUuaGACCCGUCGGUC---UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 14825 0.66 0.895544
Target:  5'- gGAGGAgggcacGGUCUcGGGC--CCGGGGCCGc -3'
miRNA:   3'- -CUCCUa-----UUAGA-CCCGucGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 14858 0.68 0.826589
Target:  5'- gGAGGccGAgg-GGGCAGCCAggGAGCUg -3'
miRNA:   3'- -CUCCuaUUagaCCCGUCGGU--CUCGGu -5'
28921 3' -55.5 NC_006146.1 + 19028 0.66 0.895544
Target:  5'- -uGGGUGG-CUGGGCAGgCCGG-GUCu -3'
miRNA:   3'- cuCCUAUUaGACCCGUC-GGUCuCGGu -5'
28921 3' -55.5 NC_006146.1 + 19946 0.67 0.859363
Target:  5'- -cGGccuccCUGGGCAGaUCAGGGCCGg -3'
miRNA:   3'- cuCCuauuaGACCCGUC-GGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 22106 0.66 0.895544
Target:  5'- -uGGGUGG-CUGGGCAGgCCGG-GUCu -3'
miRNA:   3'- cuCCUAUUaGACCCGUC-GGUCuCGGu -5'
28921 3' -55.5 NC_006146.1 + 24196 0.68 0.838417
Target:  5'- aGAGGAggg-CUGGGCcuGcgagguucuguugggGCCGGGGCCGc -3'
miRNA:   3'- -CUCCUauuaGACCCG--U---------------CGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 25184 0.66 0.895544
Target:  5'- -uGGGUGG-CUGGGCAGgCCGG-GUCu -3'
miRNA:   3'- cuCCUAUUaGACCCGUC-GGUCuCGGu -5'
28921 3' -55.5 NC_006146.1 + 26184 0.69 0.772148
Target:  5'- aGGGGAUuaGGUCggaggGGGCGGCCuGGGaaCCAa -3'
miRNA:   3'- -CUCCUA--UUAGa----CCCGUCGGuCUC--GGU- -5'
28921 3' -55.5 NC_006146.1 + 27617 0.68 0.843371
Target:  5'- -cGGGUccaCUGGGUGGCCAGggaaguuccgGGCCAg -3'
miRNA:   3'- cuCCUAuuaGACCCGUCGGUC----------UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 28262 0.66 0.895544
Target:  5'- -uGGGUGG-CUGGGCAGgCCGG-GUCu -3'
miRNA:   3'- cuCCUAUUaGACCCGUC-GGUCuCGGu -5'
28921 3' -55.5 NC_006146.1 + 33208 0.66 0.895544
Target:  5'- -cGGGUGcUCcuggugcuccgGGGCAGCCGGguGGCCGc -3'
miRNA:   3'- cuCCUAUuAGa----------CCCGUCGGUC--UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 33339 0.74 0.518185
Target:  5'- -cGGGUGcUCcgGGGCAGCCGGguGGCCGc -3'
miRNA:   3'- cuCCUAUuAGa-CCCGUCGGUC--UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 34016 0.7 0.713086
Target:  5'- gGGGGggGGUCgGGGCAGgcgggcguggucCCGGGGCCu -3'
miRNA:   3'- -CUCCuaUUAGaCCCGUC------------GGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 36240 0.66 0.920267
Target:  5'- gGAGGAgg--CaGGGCGGCUucuggAGAGCUg -3'
miRNA:   3'- -CUCCUauuaGaCCCGUCGG-----UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 39084 0.72 0.609937
Target:  5'- -----cGGUCUGGGgaaGGCCAGGGCCAu -3'
miRNA:   3'- cuccuaUUAGACCCg--UCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 39392 0.67 0.879602
Target:  5'- aGGGGGUGGuUCUGGGCcacauggacuugaaGcagaaguugGCCGGGGCCu -3'
miRNA:   3'- -CUCCUAUU-AGACCCG--------------U---------CGGUCUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.