miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 149830 0.88 0.075478
Target:  5'- -cGGGUGGUgUGGGCGGCCAGGGCCu -3'
miRNA:   3'- cuCCUAUUAgACCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 12862 0.67 0.851469
Target:  5'- uGGGGcgAggCUGGGUGGCUGGgcaGGCCGg -3'
miRNA:   3'- -CUCCuaUuaGACCCGUCGGUC---UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 167385 0.67 0.851469
Target:  5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3'
miRNA:   3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 86317 0.66 0.920267
Target:  5'- uAGGAggccCUGGGCAGggucuugaUCAGGGCCc -3'
miRNA:   3'- cUCCUauuaGACCCGUC--------GGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 54225 0.7 0.696819
Target:  5'- cAGGAUGGggcgggagcagagccUCUGGGCGGCCccGGUCAg -3'
miRNA:   3'- cUCCUAUU---------------AGACCCGUCGGucUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 44022 0.7 0.702938
Target:  5'- cGGGGAgg----GGGCGGCCgAGGGCCc -3'
miRNA:   3'- -CUCCUauuagaCCCGUCGG-UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 49471 0.69 0.752873
Target:  5'- cGGGAUGGUgaGGGCcgcggugucGGCCAGGGgCGg -3'
miRNA:   3'- cUCCUAUUAgaCCCG---------UCGGUCUCgGU- -5'
28921 3' -55.5 NC_006146.1 + 147460 0.69 0.781597
Target:  5'- uAGGccGAgacGGGCAGCCGGAGCUu -3'
miRNA:   3'- cUCCuaUUagaCCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 55649 0.68 0.80729
Target:  5'- cGAGGGgugca---GCAGCCGGAGCCAg -3'
miRNA:   3'- -CUCCUauuagaccCGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 75113 0.68 0.835075
Target:  5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3'
miRNA:   3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 117233 0.68 0.835075
Target:  5'- -cGGGcuucCUGGaaaGCGGCCGGGGCCAg -3'
miRNA:   3'- cuCCUauuaGACC---CGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 150525 0.69 0.800072
Target:  5'- uAGGAUAAaguucuccuUCUGGGCcgcGGCCAGgAGgCAg -3'
miRNA:   3'- cUCCUAUU---------AGACCCG---UCGGUC-UCgGU- -5'
28921 3' -55.5 NC_006146.1 + 33339 0.74 0.518185
Target:  5'- -cGGGUGcUCcgGGGCAGCCGGguGGCCGc -3'
miRNA:   3'- cuCCUAUuAGa-CCCGUCGGUC--UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 126798 0.68 0.835075
Target:  5'- ----------cGGGCAGCCGGGGCCu -3'
miRNA:   3'- cuccuauuagaCCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 39084 0.72 0.609937
Target:  5'- -----cGGUCUGGGgaaGGCCAGGGCCAu -3'
miRNA:   3'- cuccuaUUAGACCCg--UCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 3250 0.69 0.790908
Target:  5'- gGGGGAUAGgggacCUGGGgacggcgcaGGCCAcGAGCCGg -3'
miRNA:   3'- -CUCCUAUUa----GACCCg--------UCGGU-CUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 75041 0.68 0.835075
Target:  5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3'
miRNA:   3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 55034 0.67 0.851469
Target:  5'- cGGGAUGg---GGGUcggGGCCGGGGCCu -3'
miRNA:   3'- cUCCUAUuagaCCCG---UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 131483 0.71 0.641083
Target:  5'- cAGGugGGUCUGGGguGCCAGGGaUCGa -3'
miRNA:   3'- cUCCuaUUAGACCCguCGGUCUC-GGU- -5'
28921 3' -55.5 NC_006146.1 + 34016 0.7 0.713086
Target:  5'- gGGGGggGGUCgGGGCAGgcgggcguggucCCGGGGCCu -3'
miRNA:   3'- -CUCCuaUUAGaCCCGUC------------GGUCUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.