miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 5' -53.7 NC_006146.1 + 129500 0.66 0.970584
Target:  5'- cGCGGCcgucUACGUCUGCgggUUcguggagcggccggaUGCCCCa- -3'
miRNA:   3'- aCGCCG----AUGUAGAUGa--AG---------------AUGGGGga -5'
28921 5' -53.7 NC_006146.1 + 3391 0.66 0.969392
Target:  5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3'
miRNA:   3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 596 0.66 0.969392
Target:  5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3'
miRNA:   3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 1527 0.66 0.969392
Target:  5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3'
miRNA:   3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 2459 0.66 0.969392
Target:  5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3'
miRNA:   3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 120883 0.66 0.966263
Target:  5'- cGgGGCcccuUCUGCUUCgguggUGCCCCCc -3'
miRNA:   3'- aCgCCGauguAGAUGAAG-----AUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 56155 0.66 0.965611
Target:  5'- aGCcaaGCUGCAgcagaggauaggCUGCgUUCUGCCCCUg -3'
miRNA:   3'- aCGc--CGAUGUa-----------GAUG-AAGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 55933 0.66 0.962915
Target:  5'- cGCGGCcgugggCUGCUgcgUGCCCCCc -3'
miRNA:   3'- aCGCCGaugua-GAUGAag-AUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 166203 0.66 0.959342
Target:  5'- aGcCGuGCUGCAccucaaacaUCUGa-UCUGCCCCCg -3'
miRNA:   3'- aC-GC-CGAUGU---------AGAUgaAGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 118528 0.66 0.959342
Target:  5'- gGaCGGCUcCuUCUACcUCUucgACCCCCa -3'
miRNA:   3'- aC-GCCGAuGuAGAUGaAGA---UGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 60616 0.66 0.955539
Target:  5'- cUGgGGCUgcggagaguaucACGUCUGCgauggCU-CCCCCg -3'
miRNA:   3'- -ACgCCGA------------UGUAGAUGaa---GAuGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 90600 0.67 0.942709
Target:  5'- cGCGGCUGaAUCU--UUCUuGCUCCCUc -3'
miRNA:   3'- aCGCCGAUgUAGAugAAGA-UGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 57565 0.67 0.937948
Target:  5'- cUGgGGCUGaucagcuUCgGCUUCaACCCCCUu -3'
miRNA:   3'- -ACgCCGAUgu-----AGaUGAAGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 99866 0.67 0.931909
Target:  5'- cGCGGCguacggauguagACGUCcaGCUgauccggcgccUCUGCCCCCc -3'
miRNA:   3'- aCGCCGa-----------UGUAGa-UGA-----------AGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 85326 0.68 0.916432
Target:  5'- gGCGGCUGCcucCUGCcaccccacgUGCCCCCg -3'
miRNA:   3'- aCGCCGAUGua-GAUGaag------AUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 105681 0.68 0.916432
Target:  5'- gGCGGCUcACGUCaaagggaggagcUAUUUCcuCCCCCUg -3'
miRNA:   3'- aCGCCGA-UGUAG------------AUGAAGauGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 117208 0.68 0.897711
Target:  5'- gGUGGCa--GUCUcaaACUgCUGCCCCCg -3'
miRNA:   3'- aCGCCGaugUAGA---UGAaGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 119670 0.69 0.88403
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 54965 0.69 0.876841
Target:  5'- cGCcGCcGCcgCUACcgCUGCCCCCg -3'
miRNA:   3'- aCGcCGaUGuaGAUGaaGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 163191 0.69 0.869425
Target:  5'- aGUGGCUug----GCUUCUGCCCCUc -3'
miRNA:   3'- aCGCCGAuguagaUGAAGAUGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.