Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 5' | -51 | NC_006146.1 | + | 68325 | 0.71 | 0.90518 |
Target: 5'- gGGCCGCGaGAGgauggcgucGAGGACggccUCCGCCGu -3' miRNA: 3'- gUUGGCGC-CUU---------UUUCUGa---AGGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 39966 | 0.71 | 0.911459 |
Target: 5'- aCGGCUGgGGAagGAGAGGCUgaggCUGCUGCg -3' miRNA: 3'- -GUUGGCgCCU--UUUUCUGAa---GGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 113459 | 0.71 | 0.917487 |
Target: 5'- gAGCCGCGGccc--GGCUUCCucguaugucagcGCCACg -3' miRNA: 3'- gUUGGCGCCuuuuuCUGAAGG------------CGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 134096 | 0.71 | 0.917487 |
Target: 5'- cCAGCCGUGGAAAAuguGAgcUUUCUGCCc- -3' miRNA: 3'- -GUUGGCGCCUUUUu--CU--GAAGGCGGug -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 54952 | 0.7 | 0.928784 |
Target: 5'- --cCCGCGGGGc--GACcgCCGCCGCc -3' miRNA: 3'- guuGGCGCCUUuuuCUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 66532 | 0.7 | 0.928784 |
Target: 5'- aCGACCGCaacaagauccuGGAcguGAGGCUaaagUCCGCCAa -3' miRNA: 3'- -GUUGGCG-----------CCUuu-UUCUGA----AGGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 124592 | 0.7 | 0.928784 |
Target: 5'- cCGGCCGagaGGAAGAGgggcucgagcucGACcgCCGCCACc -3' miRNA: 3'- -GUUGGCg--CCUUUUU------------CUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 127510 | 0.7 | 0.934052 |
Target: 5'- gCAGCCG-GGgcAGAGGCagCCGCUGCu -3' miRNA: 3'- -GUUGGCgCCuuUUUCUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 97325 | 0.7 | 0.939066 |
Target: 5'- uCGACCG-GaGGAGAGGAUggcgUCCGgCCACa -3' miRNA: 3'- -GUUGGCgC-CUUUUUCUGa---AGGC-GGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 126194 | 0.7 | 0.943828 |
Target: 5'- cCGGCCaGCGGggGccacGGCcaccgCCGCCACa -3' miRNA: 3'- -GUUGG-CGCCuuUuu--CUGaa---GGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 90573 | 0.7 | 0.952607 |
Target: 5'- aGACC-CGGGAGAAGGCcccagUCGCCAa -3' miRNA: 3'- gUUGGcGCCUUUUUCUGaa---GGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 7935 | 0.7 | 0.952607 |
Target: 5'- --cCCG-GGAAAGGGGCgcCCGCCAa -3' miRNA: 3'- guuGGCgCCUUUUUCUGaaGGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 48245 | 0.69 | 0.956629 |
Target: 5'- -cGCCGCGcGGA--GGGCccCCGCCGCc -3' miRNA: 3'- guUGGCGC-CUUuuUCUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 41031 | 0.69 | 0.956629 |
Target: 5'- gAGCCGUGGGAGGAGggccuaggacaGCUUCCGagggcUCGCu -3' miRNA: 3'- gUUGGCGCCUUUUUC-----------UGAAGGC-----GGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 53502 | 0.69 | 0.956629 |
Target: 5'- uCAAgUGCGGAAugcccaccGAGGAUUUCCuCCACc -3' miRNA: 3'- -GUUgGCGCCUU--------UUUCUGAAGGcGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 2425 | 0.69 | 0.956629 |
Target: 5'- cCGACCGUGGAcguGAGGCcggaUCUGCgCACc -3' miRNA: 3'- -GUUGGCGCCUuu-UUCUGa---AGGCG-GUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 25357 | 0.69 | 0.96186 |
Target: 5'- --uCC-CGGGAAAGGugUguccggucaacgccgUCCGCCGCg -3' miRNA: 3'- guuGGcGCCUUUUUCugA---------------AGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 128236 | 0.69 | 0.963961 |
Target: 5'- ---gCGCGGGGAGcu-CUUCCGCUACc -3' miRNA: 3'- guugGCGCCUUUUucuGAAGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 44324 | 0.69 | 0.963961 |
Target: 5'- gGGCCGUGGcAGccGGGGGCUUCUGCaCAg -3' miRNA: 3'- gUUGGCGCC-UU--UUUCUGAAGGCG-GUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 34218 | 0.69 | 0.963961 |
Target: 5'- -cGCCGCccgcuucauGGggGGGGAgg-CCGCCGCa -3' miRNA: 3'- guUGGCG---------CCuuUUUCUgaaGGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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