miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 61488 0.77 0.484868
Target:  5'- -gGGGCCAaacGGGCCCUGAcCGACGGCc -3'
miRNA:   3'- ugCCCGGUgu-UUUGGGGCU-GUUGUCG- -5'
28928 3' -54 NC_006146.1 + 124090 0.77 0.49447
Target:  5'- -aGGGCCACGuAAGCCa-GAUGACAGCg -3'
miRNA:   3'- ugCCCGGUGU-UUUGGggCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 61743 0.76 0.504158
Target:  5'- -aGGGCCGggacCGAAACCaaGGCAGCGGCc -3'
miRNA:   3'- ugCCCGGU----GUUUUGGggCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 39786 0.76 0.504158
Target:  5'- uUGGGCC-CGGAGCuCCCGGCuucuggGACGGCg -3'
miRNA:   3'- uGCCCGGuGUUUUG-GGGCUG------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 128260 0.76 0.513926
Target:  5'- cUGGGcCCACuacguGAGGCCCaCGGCGGCGGCc -3'
miRNA:   3'- uGCCC-GGUG-----UUUUGGG-GCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 104744 0.76 0.523772
Target:  5'- --cGGUCAUGAGcACCCUGGCAACAGCu -3'
miRNA:   3'- ugcCCGGUGUUU-UGGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 153218 0.76 0.523772
Target:  5'- cACGGGCCGCccguAGAugCCgGACAugACGGUg -3'
miRNA:   3'- -UGCCCGGUG----UUUugGGgCUGU--UGUCG- -5'
28928 3' -54 NC_006146.1 + 48035 0.76 0.533688
Target:  5'- gGCGGGCCGgcucgggucgucCAGcGCCCCGG--GCAGCg -3'
miRNA:   3'- -UGCCCGGU------------GUUuUGGGGCUguUGUCG- -5'
28928 3' -54 NC_006146.1 + 98944 0.76 0.533688
Target:  5'- uCGGcGCCACGAAGCCCagGACAAacucguCGGCa -3'
miRNA:   3'- uGCC-CGGUGUUUUGGGg-CUGUU------GUCG- -5'
28928 3' -54 NC_006146.1 + 131477 0.76 0.543671
Target:  5'- cACGGGCCA---GGCCCCGGcCAACuucuGCu -3'
miRNA:   3'- -UGCCCGGUguuUUGGGGCU-GUUGu---CG- -5'
28928 3' -54 NC_006146.1 + 34733 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34268 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34826 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34082 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 33711 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35755 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35569 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35662 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35011 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35104 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.