Results 21 - 40 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28928 | 5' | -57.1 | NC_006146.1 | + | 168624 | 0.73 | 0.526872 |
Target: 5'- cUGGCUCCGGU-GACCUCAaagccaaacuGUCGGCc -3' miRNA: 3'- -ACCGGGGCCGcCUGGAGUau--------UAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 130320 | 0.73 | 0.526872 |
Target: 5'- cGGCCgCCcagGGCcaGGACCUCA---UCAGCg -3' miRNA: 3'- aCCGG-GG---CCG--CCUGGAGUauuAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 126521 | 0.73 | 0.53662 |
Target: 5'- cGGCCCCacacgccccccgGGCGGgggucuggcACCUCGUccccAUCAGCc -3' miRNA: 3'- aCCGGGG------------CCGCC---------UGGAGUAu---UAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 55195 | 0.73 | 0.53662 |
Target: 5'- cGGCCgCGGCGGGCgagcguCUCcu-GUCGGCc -3' miRNA: 3'- aCCGGgGCCGCCUG------GAGuauUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 57241 | 0.72 | 0.54643 |
Target: 5'- gUGGUCCa--CGGGCC-CGUGGUCAGCa -3' miRNA: 3'- -ACCGGGgccGCCUGGaGUAUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 160442 | 0.72 | 0.54643 |
Target: 5'- gUGGCCCCcaucacgaaGGCGGcGCuCUCGUGGUCAu- -3' miRNA: 3'- -ACCGGGG---------CCGCC-UG-GAGUAUUAGUcg -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 137541 | 0.72 | 0.54643 |
Target: 5'- cGG-CCCGGCGGACC-CAccggCGGCc -3' miRNA: 3'- aCCgGGGCCGCCUGGaGUauuaGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 41057 | 0.72 | 0.556297 |
Target: 5'- cGGCCCUGG-GGGCCUCGgggugGAgggaGGCc -3' miRNA: 3'- aCCGGGGCCgCCUGGAGUa----UUag--UCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 155800 | 0.72 | 0.556297 |
Target: 5'- gUGGCCCUGG-GGGCCaccgagUCAaacaggugAGUCAGCg -3' miRNA: 3'- -ACCGGGGCCgCCUGG------AGUa-------UUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 167843 | 0.72 | 0.566214 |
Target: 5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3' miRNA: 3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 169707 | 0.72 | 0.566214 |
Target: 5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3' miRNA: 3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 168775 | 0.72 | 0.566214 |
Target: 5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3' miRNA: 3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 123405 | 0.72 | 0.586177 |
Target: 5'- cUGGCCgCGGCGG-CCgaagaccaGAUCGGCg -3' miRNA: 3'- -ACCGGgGCCGCCuGGagua----UUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 66253 | 0.72 | 0.586177 |
Target: 5'- aGGCUCUGGUGGACUaCcu-GUCGGCc -3' miRNA: 3'- aCCGGGGCCGCCUGGaGuauUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 44962 | 0.71 | 0.596211 |
Target: 5'- aGGCCCCGGgGGA-CUCGaccgCGGUg -3' miRNA: 3'- aCCGGGGCCgCCUgGAGUauuaGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 18239 | 0.71 | 0.596211 |
Target: 5'- cGGCCUgGG-GGAgCUCAUGGaCAGCc -3' miRNA: 3'- aCCGGGgCCgCCUgGAGUAUUaGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 153692 | 0.71 | 0.60627 |
Target: 5'- gGGUCCUGGaGGGCCUCGUAcuucUCGuGCa -3' miRNA: 3'- aCCGGGGCCgCCUGGAGUAUu---AGU-CG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 13952 | 0.71 | 0.60627 |
Target: 5'- aGGCCCCGGCuccuGAgCUCAUGucccaaGUcCAGCc -3' miRNA: 3'- aCCGGGGCCGc---CUgGAGUAU------UA-GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 113465 | 0.71 | 0.60627 |
Target: 5'- cGG-CCCGGCuu-CCUCGUAuGUCAGCg -3' miRNA: 3'- aCCgGGGCCGccuGGAGUAU-UAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 62019 | 0.71 | 0.615339 |
Target: 5'- cUGGCCgCGGCGcucGGCCUC-UGccgcauuccagccGUCAGCg -3' miRNA: 3'- -ACCGGgGCCGC---CUGGAGuAU-------------UAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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