miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 5' -57.1 NC_006146.1 + 6610 1.12 0.001558
Target:  5'- gUGGCCCCGGCGGACCUCAUAAUCAGCa -3'
miRNA:   3'- -ACCGGGGCCGCCUGGAGUAUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 106266 0.81 0.180346
Target:  5'- cUGGCCCCGGCGGaagacauccuccugGCCUgcgcCAUGAaccUCAGCa -3'
miRNA:   3'- -ACCGGGGCCGCC--------------UGGA----GUAUU---AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 24901 0.78 0.273624
Target:  5'- -uGCCCCucGGUGGGCCagAUAAUCAGCu -3'
miRNA:   3'- acCGGGG--CCGCCUGGagUAUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 71869 0.78 0.286605
Target:  5'- gGGCCCUGGgGGGCCUCuaca-CGGCc -3'
miRNA:   3'- aCCGGGGCCgCCUGGAGuauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 114720 0.77 0.314013
Target:  5'- gGGCCCUGGCGG-CCgagu-AUCGGCg -3'
miRNA:   3'- aCCGGGGCCGCCuGGaguauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 159281 0.77 0.314013
Target:  5'- gGGCCUCGG-GGcCCUCGcAGUCGGCa -3'
miRNA:   3'- aCCGGGGCCgCCuGGAGUaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 64704 0.77 0.314013
Target:  5'- aGGCCCUGGCaggaggcccgGGACC-CGU-GUCAGCa -3'
miRNA:   3'- aCCGGGGCCG----------CCUGGaGUAuUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 128494 0.77 0.335841
Target:  5'- gGGCCCaCGGCGGGCa-CGU--UCAGCa -3'
miRNA:   3'- aCCGGG-GCCGCCUGgaGUAuuAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 21399 0.77 0.335841
Target:  5'- aGGCCUauGCGGACCUCAgAGagGGCa -3'
miRNA:   3'- aCCGGGgcCGCCUGGAGUaUUagUCG- -5'
28928 5' -57.1 NC_006146.1 + 154253 0.76 0.374629
Target:  5'- aGGCCgCUGGUGGGCCUCAgguUGA-CGGUg -3'
miRNA:   3'- aCCGG-GGCCGCCUGGAGU---AUUaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 103289 0.75 0.407771
Target:  5'- cUGGCCUCGGCcGACCUCGUGcgcuacgucuAUCuGGCc -3'
miRNA:   3'- -ACCGGGGCCGcCUGGAGUAU----------UAG-UCG- -5'
28928 5' -57.1 NC_006146.1 + 128276 0.75 0.413757
Target:  5'- aGGCCCaCGGCGGcggccgagccccagGCUUCG--GUCAGCu -3'
miRNA:   3'- aCCGGG-GCCGCC--------------UGGAGUauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 56828 0.75 0.425016
Target:  5'- cUGGCCCCcgaGGCGG-CCUCugg--CGGCg -3'
miRNA:   3'- -ACCGGGG---CCGCCuGGAGuauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 146689 0.74 0.4338
Target:  5'- cGGCCCCGGCcccaacaGACCUCGcAGgccCAGCc -3'
miRNA:   3'- aCCGGGGCCGc------CUGGAGUaUUa--GUCG- -5'
28928 5' -57.1 NC_006146.1 + 42633 0.74 0.442689
Target:  5'- cGGCCgCCGccGUGGGCCUCAcgUAGUgGGCc -3'
miRNA:   3'- aCCGG-GGC--CGCCUGGAGU--AUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 167012 0.73 0.488598
Target:  5'- gGGCCUcguCGGUGGGCCUCGccGAgacCAGCa -3'
miRNA:   3'- aCCGGG---GCCGCCUGGAGUa-UUa--GUCG- -5'
28928 5' -57.1 NC_006146.1 + 97487 0.73 0.498049
Target:  5'- -cGCCCgGGgGGACCUCAacAUCcGCg -3'
miRNA:   3'- acCGGGgCCgCCUGGAGUauUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 147439 0.73 0.498049
Target:  5'- cUGGCCaCGGCcaGGGCCUCGUAGgccgagacgggCAGCc -3'
miRNA:   3'- -ACCGGgGCCG--CCUGGAGUAUUa----------GUCG- -5'
28928 5' -57.1 NC_006146.1 + 163807 0.73 0.517191
Target:  5'- gGGCCuuGGCGGGCCaauu--UUAGCa -3'
miRNA:   3'- aCCGGggCCGCCUGGaguauuAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 43717 0.73 0.521055
Target:  5'- aGGUCCUGGCGGAUUUCcuccgcccgggccagGUGGUCGcGCa -3'
miRNA:   3'- aCCGGGGCCGCCUGGAG---------------UAUUAGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.