miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 5' -57.1 NC_006146.1 + 277 0.67 0.818149
Target:  5'- cGGCCCUGGUuaa-CUCAUAugccgcUCAGCg -3'
miRNA:   3'- aCCGGGGCCGccugGAGUAUu-----AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 545 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 716 0.7 0.6567
Target:  5'- aGGCCCCGGCcccGcCCUCGggagcccccUCAGCc -3'
miRNA:   3'- aCCGGGGCCGc--CuGGAGUauu------AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 1344 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 1476 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 1509 0.68 0.806956
Target:  5'- cGGCCUCguuugGGUGGugCUgAUGaucaaaguucucuuGUCAGCa -3'
miRNA:   3'- aCCGGGG-----CCGCCugGAgUAU--------------UAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 1647 0.7 0.6567
Target:  5'- aGGCCCCGGCcccGcCCUCGggagcccccUCAGCc -3'
miRNA:   3'- aCCGGGGCCGc--CuGGAGUauu------AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 2276 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 2408 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 2579 0.7 0.6567
Target:  5'- aGGCCCCGGCcccGcCCUCGggagcccccUCAGCc -3'
miRNA:   3'- aCCGGGGCCGc--CuGGAGUauu------AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 3208 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 3340 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 3511 0.7 0.6567
Target:  5'- aGGCCCCGGCcccGcCCUCGggagcccccUCAGCc -3'
miRNA:   3'- aCCGGGGCCGc--CuGGAGUauu------AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 4191 0.68 0.782898
Target:  5'- cGGgCUCGGCGGgaaccgGCUUCAUGA-CGGUg -3'
miRNA:   3'- aCCgGGGCCGCC------UGGAGUAUUaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 4966 0.67 0.846067
Target:  5'- gGGCCacgagagccucCUGGCGG-CCUCAcUAacgcggggugccuguGUCAGCg -3'
miRNA:   3'- aCCGG-----------GGCCGCCuGGAGU-AU---------------UAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 5510 0.66 0.893831
Target:  5'- cGGUCCUGGUcGAUCUCu--AUUGGCu -3'
miRNA:   3'- aCCGGGGCCGcCUGGAGuauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 6610 1.12 0.001558
Target:  5'- gUGGCCCCGGCGGACCUCAUAAUCAGCa -3'
miRNA:   3'- -ACCGGGGCCGCCUGGAGUAUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 9134 0.67 0.858466
Target:  5'- aGGCCCCcgcccaGGCGcccCCUCGgaccUCAGCc -3'
miRNA:   3'- aCCGGGG------CCGCcu-GGAGUauu-AGUCG- -5'
28928 5' -57.1 NC_006146.1 + 10675 0.66 0.900253
Target:  5'- aGGCCCgGggcgauacccGCGGGCaUCAUGcaggCAGCa -3'
miRNA:   3'- aCCGGGgC----------CGCCUGgAGUAUua--GUCG- -5'
28928 5' -57.1 NC_006146.1 + 12792 0.67 0.842891
Target:  5'- cGGCCCUgcaggGGCGGACgUacgGA-CGGCg -3'
miRNA:   3'- aCCGGGG-----CCGCCUGgAguaUUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.