miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 5' -57.1 NC_006146.1 + 159281 0.77 0.314013
Target:  5'- gGGCCUCGG-GGcCCUCGcAGUCGGCa -3'
miRNA:   3'- aCCGGGGCCgCCuGGAGUaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 13952 0.71 0.60627
Target:  5'- aGGCCCCGGCuccuGAgCUCAUGucccaaGUcCAGCc -3'
miRNA:   3'- aCCGGGGCCGc---CUgGAGUAU------UA-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 62019 0.71 0.615339
Target:  5'- cUGGCCgCGGCGcucGGCCUC-UGccgcauuccagccGUCAGCg -3'
miRNA:   3'- -ACCGGgGCCGC---CUGGAGuAU-------------UAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 130026 0.66 0.900882
Target:  5'- aGGCCCCGGCuccgucuccGGACCgcgagccgGGCc -3'
miRNA:   3'- aCCGGGGCCG---------CCUGGaguauuagUCG- -5'
28928 5' -57.1 NC_006146.1 + 146689 0.74 0.4338
Target:  5'- cGGCCCCGGCcccaacaGACCUCGcAGgccCAGCc -3'
miRNA:   3'- aCCGGGGCCGc------CUGGAGUaUUa--GUCG- -5'
28928 5' -57.1 NC_006146.1 + 147439 0.73 0.498049
Target:  5'- cUGGCCaCGGCcaGGGCCUCGUAGgccgagacgggCAGCc -3'
miRNA:   3'- -ACCGGgGCCG--CCUGGAGUAUUa----------GUCG- -5'
28928 5' -57.1 NC_006146.1 + 163807 0.73 0.517191
Target:  5'- gGGCCuuGGCGGGCCaauu--UUAGCa -3'
miRNA:   3'- aCCGGggCCGCCUGGaguauuAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 130320 0.73 0.526872
Target:  5'- cGGCCgCCcagGGCcaGGACCUCA---UCAGCg -3'
miRNA:   3'- aCCGG-GG---CCG--CCUGGAGUauuAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 160442 0.72 0.54643
Target:  5'- gUGGCCCCcaucacgaaGGCGGcGCuCUCGUGGUCAu- -3'
miRNA:   3'- -ACCGGGG---------CCGCC-UG-GAGUAUUAGUcg -5'
28928 5' -57.1 NC_006146.1 + 44962 0.71 0.596211
Target:  5'- aGGCCCCGGgGGA-CUCGaccgCGGUg -3'
miRNA:   3'- aCCGGGGCCgCCUgGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 167843 0.72 0.566214
Target:  5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3'
miRNA:   3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 57241 0.72 0.54643
Target:  5'- gUGGUCCa--CGGGCC-CGUGGUCAGCa -3'
miRNA:   3'- -ACCGGGgccGCCUGGaGUAUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 154253 0.76 0.374629
Target:  5'- aGGCCgCUGGUGGGCCUCAgguUGA-CGGUg -3'
miRNA:   3'- aCCGG-GGCCGCCUGGAGU---AUUaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 168775 0.72 0.566214
Target:  5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3'
miRNA:   3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 128276 0.75 0.413757
Target:  5'- aGGCCCaCGGCGGcggccgagccccagGCUUCG--GUCAGCu -3'
miRNA:   3'- aCCGGG-GCCGCC--------------UGGAGUauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 55195 0.73 0.53662
Target:  5'- cGGCCgCGGCGGGCgagcguCUCcu-GUCGGCc -3'
miRNA:   3'- aCCGGgGCCGCCUG------GAGuauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 169707 0.72 0.566214
Target:  5'- gGGCUCCcccucacgGGUGGGCgCUCA-GAUCGGCg -3'
miRNA:   3'- aCCGGGG--------CCGCCUG-GAGUaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 153692 0.71 0.60627
Target:  5'- gGGUCCUGGaGGGCCUCGUAcuucUCGuGCa -3'
miRNA:   3'- aCCGGGGCCgCCUGGAGUAUu---AGU-CG- -5'
28928 5' -57.1 NC_006146.1 + 56828 0.75 0.425016
Target:  5'- cUGGCCCCcgaGGCGG-CCUCugg--CGGCg -3'
miRNA:   3'- -ACCGGGG---CCGCCuGGAGuauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 97487 0.73 0.498049
Target:  5'- -cGCCCgGGgGGACCUCAacAUCcGCg -3'
miRNA:   3'- acCGGGgCCgCCUGGAGUauUAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.