Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28928 | 5' | -57.1 | NC_006146.1 | + | 130026 | 0.66 | 0.900882 |
Target: 5'- aGGCCCCGGCuccgucuccGGACCgcgagccgGGCc -3' miRNA: 3'- aCCGGGGCCG---------CCUGGaguauuagUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 44518 | 0.66 | 0.900253 |
Target: 5'- aGGCCCCuGGUGgGAUC-CAUGG-CAGg -3' miRNA: 3'- aCCGGGG-CCGC-CUGGaGUAUUaGUCg -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 10675 | 0.66 | 0.900253 |
Target: 5'- aGGCCCgGggcgauacccGCGGGCaUCAUGcaggCAGCa -3' miRNA: 3'- aCCGGGgC----------CGCCUGgAGUAUua--GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 167096 | 0.66 | 0.899621 |
Target: 5'- cUGGCCUgacccagaccugaCuGUGGGCCacaaaggCGUAAUCGGCa -3' miRNA: 3'- -ACCGGG-------------GcCGCCUGGa------GUAUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 3208 | 0.66 | 0.896427 |
Target: 5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3' miRNA: 3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 2276 | 0.66 | 0.896427 |
Target: 5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3' miRNA: 3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 1344 | 0.66 | 0.896427 |
Target: 5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3' miRNA: 3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 71005 | 0.66 | 0.893831 |
Target: 5'- -uGCgCCCGGgGGGCagaggcgCcgGAUCAGCu -3' miRNA: 3'- acCG-GGGCCgCCUGga-----GuaUUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 5510 | 0.66 | 0.893831 |
Target: 5'- cGGUCCUGGUcGAUCUCu--AUUGGCu -3' miRNA: 3'- aCCGGGGCCGcCUGGAGuauUAGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 86018 | 0.66 | 0.900253 |
Target: 5'- aGGaCCUgGGUGGACCaUCGcAA-CAGCc -3' miRNA: 3'- aCC-GGGgCCGCCUGG-AGUaUUaGUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 124518 | 0.66 | 0.900253 |
Target: 5'- cGGCCCUGGCgagggacggGGGCCUgGgggagcugcuGUCGGa -3' miRNA: 3'- aCCGGGGCCG---------CCUGGAgUau--------UAGUCg -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 143650 | 0.66 | 0.900253 |
Target: 5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3' miRNA: 3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 3340 | 0.66 | 0.900253 |
Target: 5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3' miRNA: 3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 2408 | 0.66 | 0.900253 |
Target: 5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3' miRNA: 3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 1476 | 0.66 | 0.900253 |
Target: 5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3' miRNA: 3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 545 | 0.66 | 0.900253 |
Target: 5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3' miRNA: 3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 155961 | 0.66 | 0.900253 |
Target: 5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3' miRNA: 3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 152883 | 0.66 | 0.900253 |
Target: 5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3' miRNA: 3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 149805 | 0.66 | 0.900253 |
Target: 5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3' miRNA: 3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' |
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28928 | 5' | -57.1 | NC_006146.1 | + | 146727 | 0.66 | 0.900253 |
Target: 5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3' miRNA: 3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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