miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 3' -53.7 NC_006146.1 + 34046 0.66 0.974271
Target:  5'- cCGgGGCCUAUgccgGCcGGGGgucccguggcACGGGGCCg -3'
miRNA:   3'- -GUgCCGGGUGa---CGuUCUU----------UGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 39186 0.66 0.965414
Target:  5'- cCGgGGUCCACUGCAAuuacacGgcGgAGGACg -3'
miRNA:   3'- -GUgCCGGGUGACGUU------CuuUgUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 158293 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 155214 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 152136 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 149058 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 145980 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 142902 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 76578 0.66 0.965414
Target:  5'- aCAUGGUCC-CcGUggGGAccgaGCAGGACg -3'
miRNA:   3'- -GUGCCGGGuGaCGuuCUU----UGUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 8010 0.66 0.966704
Target:  5'- gCGCGGCaggACUGCGAGGAcugcaucuaucgcugGCAcccgcuGGACCc -3'
miRNA:   3'- -GUGCCGgg-UGACGUUCUU---------------UGU------CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 120857 0.66 0.968575
Target:  5'- -cUGGCCCuGCUaacgGCGauAGAGuACGGGGCCc -3'
miRNA:   3'- guGCCGGG-UGA----CGU--UCUU-UGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 128078 0.66 0.968575
Target:  5'- -cCGGCCUcaUGCAGGugcgggaGGGGCCg -3'
miRNA:   3'- guGCCGGGugACGUUCuuug---UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 122555 0.66 0.974271
Target:  5'- -cCGGCCCGCUGgcc-AGACuGGACg -3'
miRNA:   3'- guGCCGGGUGACguucUUUGuCCUGg -5'
28929 3' -53.7 NC_006146.1 + 118927 0.66 0.974271
Target:  5'- -cCGGCCCGCaUGCcGGAGACcuccccgucGGcGCCa -3'
miRNA:   3'- guGCCGGGUG-ACGuUCUUUG---------UCcUGG- -5'
28929 3' -53.7 NC_006146.1 + 69913 0.66 0.974271
Target:  5'- --aGGCCgAgaGgAAGAcgugcuuguagGACAGGACCu -3'
miRNA:   3'- gugCCGGgUgaCgUUCU-----------UUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 170607 0.66 0.974271
Target:  5'- aACGGCCUuccuucgcugaGCgGCAuauGAGuuaacCAGGGCCg -3'
miRNA:   3'- gUGCCGGG-----------UGaCGUu--CUUu----GUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 39995 0.66 0.974271
Target:  5'- uGCGGCCCGuaguggccggugUgggcguaGCAGGggGCcugcugGGGGCCg -3'
miRNA:   3'- gUGCCGGGU------------Ga------CGUUCuuUG------UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 139573 0.66 0.973468
Target:  5'- --aGGCCUguaagcccaaugagGCUGCGGGggGCgAGGAg- -3'
miRNA:   3'- gugCCGGG--------------UGACGUUCuuUG-UCCUgg -5'
28929 3' -53.7 NC_006146.1 + 33321 0.66 0.971525
Target:  5'- -cCGGCCCgaGCUcCAGGAccgGGCAgcGGACCc -3'
miRNA:   3'- guGCCGGG--UGAcGUUCU---UUGU--CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 75823 0.66 0.971525
Target:  5'- --aGGCCCugcgggacaUGCAccagGGGAGCucuGGACCa -3'
miRNA:   3'- gugCCGGGug-------ACGU----UCUUUGu--CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.