miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 3' -53.7 NC_006146.1 + 5237 0.67 0.936944
Target:  5'- -cCGGCCUcgggGCUGUggGGucCAcGGACCc -3'
miRNA:   3'- guGCCGGG----UGACGuuCUuuGU-CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 5637 0.7 0.836904
Target:  5'- aCAUGGCCaug-GCGGGGGACAGGGg- -3'
miRNA:   3'- -GUGCCGGgugaCGUUCUUUGUCCUgg -5'
28929 3' -53.7 NC_006146.1 + 6473 1.13 0.002994
Target:  5'- cCACGGCCCACUGCAAGAAACAGGACCg -3'
miRNA:   3'- -GUGCCGGGUGACGUUCUUUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 7903 0.67 0.954607
Target:  5'- --aGGCCCAaagaggagGCcgagGAGAAGgGGGACCc -3'
miRNA:   3'- gugCCGGGUga------CG----UUCUUUgUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 8010 0.66 0.966704
Target:  5'- gCGCGGCaggACUGCGAGGAcugcaucuaucgcugGCAcccgcuGGACCc -3'
miRNA:   3'- -GUGCCGgg-UGACGUUCUU---------------UGU------CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 9906 0.67 0.946252
Target:  5'- gACGGCCag--GCAGGAGGCGacGGAgCCc -3'
miRNA:   3'- gUGCCGGgugaCGUUCUUUGU--CCU-GG- -5'
28929 3' -53.7 NC_006146.1 + 10532 0.66 0.964424
Target:  5'- gGCGGCCUGCcaaggGCGcugAGAcgccaguuccccguGACAuGGACCg -3'
miRNA:   3'- gUGCCGGGUGa----CGU---UCU--------------UUGU-CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 11026 0.7 0.853131
Target:  5'- --aGGCCCuCUGCGAGGAGacCAGGGa- -3'
miRNA:   3'- gugCCGGGuGACGUUCUUU--GUCCUgg -5'
28929 3' -53.7 NC_006146.1 + 12789 0.69 0.883088
Target:  5'- aCGCGGCCC--UGCAGGGgcggacguacgGACGGcGGCUg -3'
miRNA:   3'- -GUGCCGGGugACGUUCU-----------UUGUC-CUGG- -5'
28929 3' -53.7 NC_006146.1 + 14314 0.69 0.896726
Target:  5'- aGCuGGCgCAcCUGCugGAGAAcucacGCAGGGCCg -3'
miRNA:   3'- gUG-CCGgGU-GACG--UUCUU-----UGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 14351 0.73 0.675302
Target:  5'- uGCGGCCCuGCUGguGGGGuCGGGuCCc -3'
miRNA:   3'- gUGCCGGG-UGACguUCUUuGUCCuGG- -5'
28929 3' -53.7 NC_006146.1 + 14555 0.7 0.836904
Target:  5'- gGCGGCCCuggaccCAGGAAACGGGuCUa -3'
miRNA:   3'- gUGCCGGGugac--GUUCUUUGUCCuGG- -5'
28929 3' -53.7 NC_006146.1 + 14968 0.72 0.755443
Target:  5'- cUACGGUUCAacggGCAAGGGAgAGGGCUg -3'
miRNA:   3'- -GUGCCGGGUga--CGUUCUUUgUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 15045 0.7 0.86017
Target:  5'- cCAgGGCCCGCcgggccUGCGAGGAggcacugGCGGGGgCu -3'
miRNA:   3'- -GUgCCGGGUG------ACGUUCUU-------UGUCCUgG- -5'
28929 3' -53.7 NC_006146.1 + 15282 0.68 0.909425
Target:  5'- aGCGGCugaaCCGgaGCGAGggGgaggaGGGGCCg -3'
miRNA:   3'- gUGCCG----GGUgaCGUUCuuUg----UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 15705 0.67 0.950547
Target:  5'- uCACgGGgCCACUgGCcgAGGAGAgGGGGCUg -3'
miRNA:   3'- -GUG-CCgGGUGA-CG--UUCUUUgUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 15761 0.73 0.685542
Target:  5'- -cUGGCCCGCUGCugcGAcGCcgcgGGGACCu -3'
miRNA:   3'- guGCCGGGUGACGuu-CUuUG----UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 17421 0.67 0.950547
Target:  5'- aGCGGCCaUugUGCGccgucgacGGAGGCAGG-Cg -3'
miRNA:   3'- gUGCCGG-GugACGU--------UCUUUGUCCuGg -5'
28929 3' -53.7 NC_006146.1 + 17633 0.7 0.836904
Target:  5'- gGCGGCCCuggaccCAGGAAACGGGuCUa -3'
miRNA:   3'- gUGCCGGGugac--GUUCUUUGUCCuGG- -5'
28929 3' -53.7 NC_006146.1 + 17768 0.7 0.853131
Target:  5'- cCACGGUCaCACUGCGcaAGAgcAugAGGGuCCc -3'
miRNA:   3'- -GUGCCGG-GUGACGU--UCU--UugUCCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.