miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 3' -53.7 NC_006146.1 + 116044 0.78 0.409547
Target:  5'- cCACGGCCCGCUGCuGGGGAUGGcGCa -3'
miRNA:   3'- -GUGCCGGGUGACGuUCUUUGUCcUGg -5'
28929 3' -53.7 NC_006146.1 + 155142 0.71 0.802236
Target:  5'- cCGCGGCgUCGCaGCAGcGGGcCAGGGCCa -3'
miRNA:   3'- -GUGCCG-GGUGaCGUU-CUUuGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 135716 0.7 0.828502
Target:  5'- --gGGUCCGCUGCccguccuGGAGcuCGGGGCCg -3'
miRNA:   3'- gugCCGGGUGACGu------UCUUu-GUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 34046 0.66 0.974271
Target:  5'- cCGgGGCCUAUgccgGCcGGGGgucccguggcACGGGGCCg -3'
miRNA:   3'- -GUgCCGGGUGa---CGuUCUU----------UGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 44196 0.76 0.552003
Target:  5'- gCGCGGCUgCACUGCAgccGGggGCGGuGCCu -3'
miRNA:   3'- -GUGCCGG-GUGACGU---UCuuUGUCcUGG- -5'
28929 3' -53.7 NC_006146.1 + 156515 0.76 0.552003
Target:  5'- aCGCGGCCCggaggggaGCgggagGCGAGAuccCGGGACCc -3'
miRNA:   3'- -GUGCCGGG--------UGa----CGUUCUuu-GUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 68134 0.74 0.644399
Target:  5'- aGCGGCgCCACgccacGCAGGAAAgGGGcuGCCu -3'
miRNA:   3'- gUGCCG-GGUGa----CGUUCUUUgUCC--UGG- -5'
28929 3' -53.7 NC_006146.1 + 62382 0.74 0.654721
Target:  5'- --aGGCCCcuggccguucaGCUcGCGAGGAAgAGGACCu -3'
miRNA:   3'- gugCCGGG-----------UGA-CGUUCUUUgUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 64431 0.73 0.695738
Target:  5'- gGCGGCguaCGCUGcCAGGAGACagaGGGGCUg -3'
miRNA:   3'- gUGCCGg--GUGAC-GUUCUUUG---UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 131068 0.72 0.745714
Target:  5'- -cCGGCCCACUGUgcggccGAGGCcgccGGGCCg -3'
miRNA:   3'- guGCCGGGUGACGuu----CUUUGu---CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 151003 0.73 0.715957
Target:  5'- --gGGCCCugUcCAGGAcgUAGGGCCa -3'
miRNA:   3'- gugCCGGGugAcGUUCUuuGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 127952 0.73 0.695738
Target:  5'- aGCGuGCCCgggGCggaggGCAGGGAcCGGGACCu -3'
miRNA:   3'- gUGC-CGGG---UGa----CGUUCUUuGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 159048 0.77 0.473422
Target:  5'- --gGGCCCGCcccaaGCccGAGAAGCAGGGCCc -3'
miRNA:   3'- gugCCGGGUGa----CG--UUCUUUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 150727 0.72 0.745714
Target:  5'- gGgGGCCCuCUGCaAAGAGGCgaGGGAUCu -3'
miRNA:   3'- gUgCCGGGuGACG-UUCUUUG--UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 56237 0.76 0.541927
Target:  5'- aGCgGGUCCGCggggGC-GGAGGCGGGGCCg -3'
miRNA:   3'- gUG-CCGGGUGa---CGuUCUUUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 116452 0.73 0.685542
Target:  5'- -cCGGCCCAUUGUAGGccAGCGucuGGGCCa -3'
miRNA:   3'- guGCCGGGUGACGUUCu-UUGU---CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 43262 0.72 0.745714
Target:  5'- gCGCGGCCUg--GaCAAGAGGCAgcGGGCCg -3'
miRNA:   3'- -GUGCCGGGugaC-GUUCUUUGU--CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 43202 0.71 0.811159
Target:  5'- gACGGCCCAgucCUGCuacGAGGAguacguGCAgcGGACCu -3'
miRNA:   3'- gUGCCGGGU---GACG---UUCUU------UGU--CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 103912 0.76 0.541927
Target:  5'- cCACGGCaCCACUGCAAGAAuu--GACUc -3'
miRNA:   3'- -GUGCCG-GGUGACGUUCUUugucCUGG- -5'
28929 3' -53.7 NC_006146.1 + 94918 0.74 0.623734
Target:  5'- gGCGaGCCCACgcagacgaUGCAGGGGACGuGGCCg -3'
miRNA:   3'- gUGC-CGGGUG--------ACGUUCUUUGUcCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.