miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 5' -61.7 NC_006146.1 + 6512 1.07 0.001298
Target:  5'- gAUGCUCCUGACCCUUGGCGGCGGCGGc -3'
miRNA:   3'- -UACGAGGACUGGGAACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 56823 0.77 0.173662
Target:  5'- -gGCUUCUGGCCCccgaggcggccucUGGCGGCGGgGGc -3'
miRNA:   3'- uaCGAGGACUGGGa------------ACCGCCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 123709 0.77 0.175355
Target:  5'- -gGggCCUGGCgCUcggGGCGGCGGCGGg -3'
miRNA:   3'- uaCgaGGACUGgGAa--CCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 113696 0.74 0.256027
Target:  5'- -gGcCUCC-GGCCCggGGaCGGCGGCGGc -3'
miRNA:   3'- uaC-GAGGaCUGGGaaCC-GCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 118044 0.72 0.320515
Target:  5'- -cGgaCCUGGagccCCCgggcgggGGCGGCGGCGGc -3'
miRNA:   3'- uaCgaGGACU----GGGaa-----CCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 70157 0.72 0.327594
Target:  5'- -gGCUCCUGGCCggggcgcUGGUGGCcGGCGa -3'
miRNA:   3'- uaCGAGGACUGGga-----ACCGCCG-CCGCc -5'
28929 5' -61.7 NC_006146.1 + 39664 0.72 0.334788
Target:  5'- cUGC-CUUGG-CCUUGGaGGCGGCGGg -3'
miRNA:   3'- uACGaGGACUgGGAACCgCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 149571 0.71 0.364708
Target:  5'- --cCUCCgagaaUGACUCUUGGaaggGGCGGCGGg -3'
miRNA:   3'- uacGAGG-----ACUGGGAACCg---CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 50207 0.71 0.364708
Target:  5'- cUGCUCCagcguccgcccgUGcACCCgcgagaUGGUGGCGGUGGc -3'
miRNA:   3'- uACGAGG------------AC-UGGGa-----ACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 2811 0.71 0.372471
Target:  5'- -gGCcuUCCaGACCaa-GGCGGUGGCGGa -3'
miRNA:   3'- uaCG--AGGaCUGGgaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 115356 0.71 0.372472
Target:  5'- -gGCcuUCCUGGCCg--GcGUGGCGGCGGa -3'
miRNA:   3'- uaCG--AGGACUGGgaaC-CGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 115144 0.71 0.372472
Target:  5'- cUGCcCCUGGCCCgccGCcgGGCGGUGGa -3'
miRNA:   3'- uACGaGGACUGGGaacCG--CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 147159 0.71 0.380346
Target:  5'- -gGCagUUGACCC--GGCGGCGGCGc -3'
miRNA:   3'- uaCGagGACUGGGaaCCGCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 55245 0.71 0.388332
Target:  5'- -aGCUCCaccaUGACCCccgcccgGGUGGCGGCc- -3'
miRNA:   3'- uaCGAGG----ACUGGGaa-----CCGCCGCCGcc -5'
28929 5' -61.7 NC_006146.1 + 33210 0.7 0.438483
Target:  5'- gGUGCUCCUGGugcUCCggggcagccgGGUGGCcgccGGCGGg -3'
miRNA:   3'- -UACGAGGACU---GGGaa--------CCGCCG----CCGCC- -5'
28929 5' -61.7 NC_006146.1 + 52964 0.7 0.438483
Target:  5'- -cGUUCaUGGCCCUccgcggGGCGG-GGCGGg -3'
miRNA:   3'- uaCGAGgACUGGGAa-----CCGCCgCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 148534 0.7 0.456006
Target:  5'- cAUGCUgCUGGCCaCUgccaugaugGGUGGUGGCcGGu -3'
miRNA:   3'- -UACGAgGACUGG-GAa--------CCGCCGCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 123282 0.69 0.501381
Target:  5'- -gGCUCgUGGCCCUaucggcgaucccUGGCGGCcgccgaGUGGa -3'
miRNA:   3'- uaCGAGgACUGGGA------------ACCGCCGc-----CGCC- -5'
28929 5' -61.7 NC_006146.1 + 41484 0.69 0.510697
Target:  5'- gAUGUUgCUGGgCCUUGG-GGUGcGCGGg -3'
miRNA:   3'- -UACGAgGACUgGGAACCgCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 101219 0.69 0.520084
Target:  5'- cGUGUUCCUGGCCCUgGGCaacaGCuucuacuuuauGGUGGg -3'
miRNA:   3'- -UACGAGGACUGGGAaCCGc---CG-----------CCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.