miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 5' -61.7 NC_006146.1 + 56823 0.77 0.173662
Target:  5'- -gGCUUCUGGCCCccgaggcggccucUGGCGGCGGgGGc -3'
miRNA:   3'- uaCGAGGACUGGGa------------ACCGCCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 168606 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 3341 0.68 0.577645
Target:  5'- cGUGUUCCUGAUUgUgaGGCaGCGGgGGg -3'
miRNA:   3'- -UACGAGGACUGGgAa-CCGcCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 165595 0.66 0.685467
Target:  5'- --aUUCCUGugGCCCaagUGGUcaucGGCGGUGGg -3'
miRNA:   3'- uacGAGGAC--UGGGa--ACCG----CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 2811 0.71 0.372471
Target:  5'- -gGCcuUCCaGACCaa-GGCGGUGGCGGa -3'
miRNA:   3'- uaCG--AGGaCUGGgaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 147159 0.71 0.380346
Target:  5'- -gGCagUUGACCC--GGCGGCGGCGc -3'
miRNA:   3'- uaCGagGACUGGGaaCCGCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 52964 0.7 0.438483
Target:  5'- -cGUUCaUGGCCCUccgcggGGCGG-GGCGGg -3'
miRNA:   3'- uaCGAGgACUGGGAa-----CCGCCgCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 148534 0.7 0.456006
Target:  5'- cAUGCUgCUGGCCaCUgccaugaugGGUGGUGGCcGGu -3'
miRNA:   3'- -UACGAgGACUGG-GAa--------CCGCCGCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 170499 0.68 0.539055
Target:  5'- -gGCUUCcccgGACCCccaGCGcGCGGCGGg -3'
miRNA:   3'- uaCGAGGa---CUGGGaacCGC-CGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 167673 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 41349 0.68 0.548629
Target:  5'- ----aUCUGGCCCagggccUGGCGGUGGUGGc -3'
miRNA:   3'- uacgaGGACUGGGa-----ACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 62006 0.68 0.539055
Target:  5'- -cGCUgCUGACUCgcUGGCcGCGGCGc -3'
miRNA:   3'- uaCGAgGACUGGGa-ACCGcCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 113696 0.74 0.256027
Target:  5'- -gGcCUCC-GGCCCggGGaCGGCGGCGGc -3'
miRNA:   3'- uaC-GAGGaCUGGGaaCC-GCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 62507 0.68 0.567929
Target:  5'- -aGCaCCUGGCCCUgGGgGGCuGCGu -3'
miRNA:   3'- uaCGaGGACUGGGAaCCgCCGcCGCc -5'
28929 5' -61.7 NC_006146.1 + 70157 0.72 0.327594
Target:  5'- -gGCUCCUGGCCggggcgcUGGUGGCcGGCGa -3'
miRNA:   3'- uaCGAGGACUGGga-----ACCGCCG-CCGCc -5'
28929 5' -61.7 NC_006146.1 + 101219 0.69 0.520084
Target:  5'- cGUGUUCCUGGCCCUgGGCaacaGCuucuacuuuauGGUGGg -3'
miRNA:   3'- -UACGAGGACUGGGAaCCGc---CG-----------CCGCC- -5'
28929 5' -61.7 NC_006146.1 + 46266 0.68 0.567929
Target:  5'- gGUGCgcgUCCccgacguuuUGAgCCccGGUGGCGGCGGu -3'
miRNA:   3'- -UACG---AGG---------ACUgGGaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 169538 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 149571 0.71 0.364708
Target:  5'- --cCUCCgagaaUGACUCUUGGaaggGGCGGCGGg -3'
miRNA:   3'- uacGAGG-----ACUGGGAACCg---CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 33210 0.7 0.438483
Target:  5'- gGUGCUCCUGGugcUCCggggcagccgGGUGGCcgccGGCGGg -3'
miRNA:   3'- -UACGAGGACU---GGGaa--------CCGCCG----CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.