miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 5' -61.7 NC_006146.1 + 1226 0.68 0.542878
Target:  5'- -cGCUCUUGGCCggUGGCaGCauucuccaaaccuggGGCGGa -3'
miRNA:   3'- uaCGAGGACUGGgaACCGcCG---------------CCGCC- -5'
28929 5' -61.7 NC_006146.1 + 2811 0.71 0.372471
Target:  5'- -gGCcuUCCaGACCaa-GGCGGUGGCGGa -3'
miRNA:   3'- uaCG--AGGaCUGGgaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 3341 0.68 0.577645
Target:  5'- cGUGUUCCUGAUUgUgaGGCaGCGGgGGg -3'
miRNA:   3'- -UACGAGGACUGGgAa-CCGcCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 6512 1.07 0.001298
Target:  5'- gAUGCUCCUGACCCUUGGCGGCGGCGGc -3'
miRNA:   3'- -UACGAGGACUGGGAACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 13106 0.66 0.685468
Target:  5'- -cGgaCCUGGCCCUguuugUGGaCGGgGGCu- -3'
miRNA:   3'- uaCgaGGACUGGGA-----ACC-GCCgCCGcc -5'
28929 5' -61.7 NC_006146.1 + 18840 0.68 0.56793
Target:  5'- aGUGCuUCCaGACCCcgGGCgcugccggGGUGGUGGa -3'
miRNA:   3'- -UACG-AGGaCUGGGaaCCG--------CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 18900 0.67 0.616806
Target:  5'- uGUGCUUCUaccgagacACCCUgacGGUGGUGGgGGg -3'
miRNA:   3'- -UACGAGGAc-------UGGGAa--CCGCCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 24278 0.66 0.685468
Target:  5'- -gGcCUCgUGACCC-UGGcCGGgGGCuGGa -3'
miRNA:   3'- uaC-GAGgACUGGGaACC-GCCgCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 33210 0.7 0.438483
Target:  5'- gGUGCUCCUGGugcUCCggggcagccgGGUGGCcgccGGCGGg -3'
miRNA:   3'- -UACGAGGACU---GGGaa--------CCGCCG----CCGCC- -5'
28929 5' -61.7 NC_006146.1 + 39664 0.72 0.334788
Target:  5'- cUGC-CUUGG-CCUUGGaGGCGGCGGg -3'
miRNA:   3'- uACGaGGACUgGGAACCgCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 40045 0.67 0.606002
Target:  5'- -cGCUUgUGACgCUgugagccaUGGCacaugugGGCGGCGGg -3'
miRNA:   3'- uaCGAGgACUGgGA--------ACCG-------CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 40586 0.66 0.64631
Target:  5'- -aGgUCCUGGCCCUgGGCGGCc---- -3'
miRNA:   3'- uaCgAGGACUGGGAaCCGCCGccgcc -5'
28929 5' -61.7 NC_006146.1 + 41349 0.68 0.548629
Target:  5'- ----aUCUGGCCCagggccUGGCGGUGGUGGc -3'
miRNA:   3'- uacgaGGACUGGGa-----ACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 41484 0.69 0.510697
Target:  5'- gAUGUUgCUGGgCCUUGG-GGUGcGCGGg -3'
miRNA:   3'- -UACGAgGACUgGGAACCgCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 42081 0.68 0.529539
Target:  5'- cUGCUCCUGGaccgcgccgUCCUUcGCGGaCGGCGc -3'
miRNA:   3'- uACGAGGACU---------GGGAAcCGCC-GCCGCc -5'
28929 5' -61.7 NC_006146.1 + 44235 0.66 0.665939
Target:  5'- -cGuCUCCucUGGCCg--GGCGGCGGUGu -3'
miRNA:   3'- uaC-GAGG--ACUGGgaaCCGCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 46266 0.68 0.567929
Target:  5'- gGUGCgcgUCCccgacguuuUGAgCCccGGUGGCGGCGGu -3'
miRNA:   3'- -UACG---AGG---------ACUgGGaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 46765 0.66 0.665939
Target:  5'- -cGcCUCCcGACCCcgGGCGGaUGGCuGGc -3'
miRNA:   3'- uaC-GAGGaCUGGGaaCCGCC-GCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 48334 0.66 0.67572
Target:  5'- cUGCUCCUGACUaccaaugGGaCGGUaGUGGa -3'
miRNA:   3'- uACGAGGACUGGgaa----CC-GCCGcCGCC- -5'
28929 5' -61.7 NC_006146.1 + 50207 0.71 0.364708
Target:  5'- cUGCUCCagcguccgcccgUGcACCCgcgagaUGGUGGCGGUGGc -3'
miRNA:   3'- uACGAGG------------AC-UGGGa-----ACCGCCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.