Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28931 | 3' | -63.9 | NC_006146.1 | + | 20946 | 0.66 | 0.576658 |
Target: 5'- -gCCCCCaCUCCCacGCCuGGGCgccCCUc- -3' miRNA: 3'- gaGGGGG-GAGGG--CGG-CCCGaa-GGAuu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 29322 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 13933 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 17010 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 26244 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 23166 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 137699 | 0.66 | 0.576658 |
Target: 5'- gCUCCCCCuccggcCUCCCcCCGGGgUgcccgggCCUAc -3' miRNA: 3'- -GAGGGGG------GAGGGcGGCCCgAa------GGAUu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 819 | 0.66 | 0.538476 |
Target: 5'- -gCCggCCCCUCCCGCCGGcCaUCCc-- -3' miRNA: 3'- gaGG--GGGGAGGGCGGCCcGaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 1751 | 0.66 | 0.538476 |
Target: 5'- -gCCggCCCCUCCCGCCGGcCaUCCc-- -3' miRNA: 3'- gaGG--GGGGAGGGCGGCCcGaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 2683 | 0.66 | 0.538476 |
Target: 5'- -gCCggCCCCUCCCGCCGGcCaUCCc-- -3' miRNA: 3'- gaGG--GGGGAGGGCGGCCcGaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 3615 | 0.66 | 0.538476 |
Target: 5'- -gCCggCCCCUCCCGCCGGcCaUCCc-- -3' miRNA: 3'- gaGG--GGGGAGGGCGGCCcGaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 102588 | 0.66 | 0.538476 |
Target: 5'- aUCCUCUCgcggCCCGaggaGGGCUUCCg-- -3' miRNA: 3'- gAGGGGGGa---GGGCgg--CCCGAAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 20088 | 0.66 | 0.557474 |
Target: 5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3' miRNA: 3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 117216 | 0.67 | 0.492051 |
Target: 5'- uCUCaaaCUgCUgCCC-CCGGGCUUCCUGGa -3' miRNA: 3'- -GAGg--GGgGA-GGGcGGCCCGAAGGAUU- -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 42461 | 0.67 | 0.473997 |
Target: 5'- -cUCCCCCUCCCGCCcGGuCUgcggCCc-- -3' miRNA: 3'- gaGGGGGGAGGGCGGcCC-GAa---GGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 113851 | 0.67 | 0.473997 |
Target: 5'- --gCCCCCUCCCGCCucaacccugGcGGCUUCg--- -3' miRNA: 3'- gagGGGGGAGGGCGG---------C-CCGAAGgauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 42035 | 0.67 | 0.488415 |
Target: 5'- cCUCCgCCCCcucuucguggcccuUCCUgugccugGCCGGGCUUaCCUGc -3' miRNA: 3'- -GAGG-GGGG--------------AGGG-------CGGCCCGAA-GGAUu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 4246 | 0.67 | 0.501196 |
Target: 5'- gCUCCCCCUUCCCGgCuCGcucuGGCgUCCg-- -3' miRNA: 3'- -GAGGGGGGAGGGC-G-GC----CCGaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 136748 | 0.67 | 0.501196 |
Target: 5'- -aCCCCCCaccCUCGCCGGGgcUCCg-- -3' miRNA: 3'- gaGGGGGGa--GGGCGGCCCgaAGGauu -5' |
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28931 | 3' | -63.9 | NC_006146.1 | + | 22605 | 0.67 | 0.510416 |
Target: 5'- uCUCCgCgCUCCUGCUGGaGCU-CCUGu -3' miRNA: 3'- -GAGGgGgGAGGGCGGCC-CGAaGGAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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