miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 3' -63.9 NC_006146.1 + 4041 1.05 0.001061
Target:  5'- gCUCCCCCCUCCCGCCGGGCUUCCUAAg -3'
miRNA:   3'- -GAGGGGGGAGGGCGGCCCGAAGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 126784 0.8 0.070701
Target:  5'- -cCCCCCCUCCuCGCCGGGCagCCg-- -3'
miRNA:   3'- gaGGGGGGAGG-GCGGCCCGaaGGauu -5'
28931 3' -63.9 NC_006146.1 + 115896 0.75 0.153436
Target:  5'- -gCCCCCaUCCCGCCcgggGGGCUUCCg-- -3'
miRNA:   3'- gaGGGGGgAGGGCGG----CCCGAAGGauu -5'
28931 3' -63.9 NC_006146.1 + 103662 0.75 0.169039
Target:  5'- aUCCCCCCagCCuCCGuGGCUUCCUGu -3'
miRNA:   3'- gAGGGGGGagGGcGGC-CCGAAGGAUu -5'
28931 3' -63.9 NC_006146.1 + 40766 0.74 0.204546
Target:  5'- aCUCCCCUgUCCCGCCugaGGGUcUCCa-- -3'
miRNA:   3'- -GAGGGGGgAGGGCGG---CCCGaAGGauu -5'
28931 3' -63.9 NC_006146.1 + 46315 0.72 0.240749
Target:  5'- -gCCCCUCUUCCucucgGCCGGGCUUCUg-- -3'
miRNA:   3'- gaGGGGGGAGGG-----CGGCCCGAAGGauu -5'
28931 3' -63.9 NC_006146.1 + 42707 0.72 0.269769
Target:  5'- -gCCCCCCagcgCCCGCuCGGGCUggcagCCg-- -3'
miRNA:   3'- gaGGGGGGa---GGGCG-GCCCGAa----GGauu -5'
28931 3' -63.9 NC_006146.1 + 47940 0.71 0.315037
Target:  5'- cCUCCCCgCCUCCCGCUGcguggacaGGCUcgacaaggUCCUc- -3'
miRNA:   3'- -GAGGGG-GGAGGGCGGC--------CCGA--------AGGAuu -5'
28931 3' -63.9 NC_006146.1 + 71206 0.7 0.321953
Target:  5'- aUCCUCaCUCCCGCCggGGGCUucgagUCCUGg -3'
miRNA:   3'- gAGGGGgGAGGGCGG--CCCGA-----AGGAUu -5'
28931 3' -63.9 NC_006146.1 + 125549 0.7 0.328983
Target:  5'- -aCCCUCCUCCCGuuGGGUaccggCCUc- -3'
miRNA:   3'- gaGGGGGGAGGGCggCCCGaa---GGAuu -5'
28931 3' -63.9 NC_006146.1 + 55663 0.69 0.373513
Target:  5'- aUCCCUgggCCUCUCaGCUGGGCUcCCUGGg -3'
miRNA:   3'- gAGGGG---GGAGGG-CGGCCCGAaGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 106200 0.69 0.389238
Target:  5'- gUCCCgggCCUCCUGCCaGGGCcuggugUCCUGGg -3'
miRNA:   3'- gAGGGg--GGAGGGCGG-CCCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 117571 0.69 0.389238
Target:  5'- -gCCCCgCggCCGCCGGGCcUCCUc- -3'
miRNA:   3'- gaGGGGgGagGGCGGCCCGaAGGAuu -5'
28931 3' -63.9 NC_006146.1 + 71838 0.69 0.397262
Target:  5'- cCUCCaccacuacggcaCCCCgacaCCCGCCGGGC--CCUGGg -3'
miRNA:   3'- -GAGG------------GGGGa---GGGCGGCCCGaaGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 167066 0.69 0.397262
Target:  5'- -aCCCCCCUuaCCCGCC-GGCU-CCa-- -3'
miRNA:   3'- gaGGGGGGA--GGGCGGcCCGAaGGauu -5'
28931 3' -63.9 NC_006146.1 + 119076 0.69 0.40785
Target:  5'- -gCCCCCCUCCaCGCCGccccggggaacggguGGCUUggcgccucagaccCCUAAa -3'
miRNA:   3'- gaGGGGGGAGG-GCGGC---------------CCGAA-------------GGAUU- -5'
28931 3' -63.9 NC_006146.1 + 119326 0.69 0.413624
Target:  5'- gUCCCCCCUUCgGCCGcGCcgCCUc- -3'
miRNA:   3'- gAGGGGGGAGGgCGGCcCGaaGGAuu -5'
28931 3' -63.9 NC_006146.1 + 126139 0.68 0.430396
Target:  5'- gUUCCCCg-CCCGCCGGGCc-CCg-- -3'
miRNA:   3'- gAGGGGGgaGGGCGGCCCGaaGGauu -5'
28931 3' -63.9 NC_006146.1 + 118204 0.68 0.430396
Target:  5'- -cCCCCugaCCUCCCGcCCGGaGCUggacgaugUCCUGGa -3'
miRNA:   3'- gaGGGG---GGAGGGC-GGCC-CGA--------AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 127710 0.68 0.437215
Target:  5'- aUCCCCgCCUCCCGCgaggagcugaugGGGCUgggCCg-- -3'
miRNA:   3'- gAGGGG-GGAGGGCGg-----------CCCGAa--GGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.