miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 3' -63.9 NC_006146.1 + 126784 0.8 0.070701
Target:  5'- -cCCCCCCUCCuCGCCGGGCagCCg-- -3'
miRNA:   3'- gaGGGGGGAGG-GCGGCCCGaaGGauu -5'
28931 3' -63.9 NC_006146.1 + 13933 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 129776 0.67 0.492051
Target:  5'- -aCgCCCCUCCC-CCGGGac-CCUAAa -3'
miRNA:   3'- gaGgGGGGAGGGcGGCCCgaaGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 117216 0.67 0.492051
Target:  5'- uCUCaaaCUgCUgCCC-CCGGGCUUCCUGGa -3'
miRNA:   3'- -GAGg--GGgGA-GGGcGGCCCGAAGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 127710 0.68 0.437215
Target:  5'- aUCCCCgCCUCCCGCgaggagcugaugGGGCUgggCCg-- -3'
miRNA:   3'- gAGGGG-GGAGGGCGg-----------CCCGAa--GGauu -5'
28931 3' -63.9 NC_006146.1 + 167066 0.69 0.397262
Target:  5'- -aCCCCCCUuaCCCGCC-GGCU-CCa-- -3'
miRNA:   3'- gaGGGGGGA--GGGCGGcCCGAaGGauu -5'
28931 3' -63.9 NC_006146.1 + 137699 0.66 0.576658
Target:  5'- gCUCCCCCuccggcCUCCCcCCGGGgUgcccgggCCUAc -3'
miRNA:   3'- -GAGGGGG------GAGGGcGGCCCgAa------GGAUu -5'
28931 3' -63.9 NC_006146.1 + 29322 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 20088 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 112445 0.67 0.510416
Target:  5'- --gCCCCCUCCgGCCGuGGUggUCaCUGGg -3'
miRNA:   3'- gagGGGGGAGGgCGGC-CCGa-AG-GAUU- -5'
28931 3' -63.9 NC_006146.1 + 42461 0.67 0.473997
Target:  5'- -cUCCCCCUCCCGCCcGGuCUgcggCCc-- -3'
miRNA:   3'- gaGGGGGGAGGGCGGcCC-GAa---GGauu -5'
28931 3' -63.9 NC_006146.1 + 46315 0.72 0.240749
Target:  5'- -gCCCCUCUUCCucucgGCCGGGCUUCUg-- -3'
miRNA:   3'- gaGGGGGGAGGG-----CGGCCCGAAGGauu -5'
28931 3' -63.9 NC_006146.1 + 23166 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 42707 0.72 0.269769
Target:  5'- -gCCCCCCagcgCCCGCuCGGGCUggcagCCg-- -3'
miRNA:   3'- gaGGGGGGa---GGGCG-GCCCGAa----GGauu -5'
28931 3' -63.9 NC_006146.1 + 33525 0.67 0.501196
Target:  5'- -gCCUCCCUCCCuagguuguGCCcGGCUUgCCUGg -3'
miRNA:   3'- gaGGGGGGAGGG--------CGGcCCGAA-GGAUu -5'
28931 3' -63.9 NC_006146.1 + 26244 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 106200 0.69 0.389238
Target:  5'- gUCCCgggCCUCCUGCCaGGGCcuggugUCCUGGg -3'
miRNA:   3'- gAGGGg--GGAGGGCGG-CCCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 17010 0.66 0.557474
Target:  5'- cCUCCUCUCUCCCuccCCGaGGCcccggcUCCUGAg -3'
miRNA:   3'- -GAGGGGGGAGGGc--GGC-CCGa-----AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 118204 0.68 0.430396
Target:  5'- -cCCCCugaCCUCCCGcCCGGaGCUggacgaugUCCUGGa -3'
miRNA:   3'- gaGGGG---GGAGGGC-GGCC-CGA--------AGGAUU- -5'
28931 3' -63.9 NC_006146.1 + 41038 0.68 0.447559
Target:  5'- aUCUCCCC-CCCGuCCGcGGCggcCCUGGg -3'
miRNA:   3'- gAGGGGGGaGGGC-GGC-CCGaa-GGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.