miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 57181 0.72 0.880392
Target:  5'- aCCCCAGUGggccCCCUGGuggagaacauCAAGAGCACc- -3'
miRNA:   3'- -GGGGUUACa---GGGGCU----------GUUUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 145030 0.72 0.880392
Target:  5'- aCCaCAAUGUUCCCGgGCAGcguGAGCGCGc -3'
miRNA:   3'- gGG-GUUACAGGGGC-UGUU---UUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 137882 0.71 0.894342
Target:  5'- gCCCCGGgccggcaggggGUCCCCGugGAcaGGGC-CGGg -3'
miRNA:   3'- -GGGGUUa----------CAGGGGCugUU--UUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 74795 0.71 0.894342
Target:  5'- gUCCCA--GUUCCCGGCAGAcgcAGCGCu- -3'
miRNA:   3'- -GGGGUuaCAGGGGCUGUUU---UCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 8513 0.71 0.894342
Target:  5'- cCCaCCGggGUCCCgGGCGcgGGCGCGc -3'
miRNA:   3'- -GG-GGUuaCAGGGgCUGUuuUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 34150 0.71 0.907338
Target:  5'- cUCCCGGaG-CCCCGGCGAGGGUGgGGg -3'
miRNA:   3'- -GGGGUUaCaGGGGCUGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 150486 0.71 0.924994
Target:  5'- cCCCUggUagccGUCCCUGuCGGAGGCGgAGg -3'
miRNA:   3'- -GGGGuuA----CAGGGGCuGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 128633 0.7 0.930383
Target:  5'- uCCCCGGUGUCgCCCaGCu-GAGC-CAGc -3'
miRNA:   3'- -GGGGUUACAG-GGGcUGuuUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 55153 0.7 0.930383
Target:  5'- cCCCCAAUGUCagCCGcCGgGAGGC-CAGg -3'
miRNA:   3'- -GGGGUUACAGg-GGCuGU-UUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 57205 0.7 0.935523
Target:  5'- gCCgCCGccGUCCCCGGgcCGGAGGC-CGGg -3'
miRNA:   3'- -GG-GGUuaCAGGGGCU--GUUUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 39309 0.7 0.935523
Target:  5'- cCCCCAcuaccacaGUaGUCCCCGcCAcAAGCAcCAGu -3'
miRNA:   3'- -GGGGU--------UA-CAGGGGCuGUuUUCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 145692 0.7 0.944608
Target:  5'- gUUCAAauUGUCCCCGccugggaGCAGGAGCGCGu -3'
miRNA:   3'- gGGGUU--ACAGGGGC-------UGUUUUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 120634 0.7 0.945061
Target:  5'- gCCCCu-UGgCCCCGACGAAGG-ACGa -3'
miRNA:   3'- -GGGGuuACaGGGGCUGUUUUCgUGUc -5'
28931 5' -51.4 NC_006146.1 + 110773 0.7 0.945061
Target:  5'- cCCCCAcagGUcccucCCCCGGCcccuuGCACAGa -3'
miRNA:   3'- -GGGGUua-CA-----GGGGCUGuuuu-CGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 3334 0.69 0.953624
Target:  5'- gCUCCAacGUGUUCCUGAUuguGAGGCAgCGGg -3'
miRNA:   3'- -GGGGU--UACAGGGGCUGu--UUUCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 49580 0.69 0.957548
Target:  5'- gCCUCGAUGUCCUCcaggauGACGcgGAGGCGCu- -3'
miRNA:   3'- -GGGGUUACAGGGG------CUGU--UUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 2716 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 1784 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 852 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 3648 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.