miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 4075 1.12 0.005785
Target:  5'- cCCCCAAUGUCCCCGACAAAAGCACAGg -3'
miRNA:   3'- -GGGGUUACAGGGGCUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 66549 0.8 0.484889
Target:  5'- gCCCCGAUGUCUuuGAUcuuguGGCGCAGg -3'
miRNA:   3'- -GGGGUUACAGGggCUGuuu--UCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 165958 0.8 0.494632
Target:  5'- gCCCCug-GUCCCCGggGCAcAGAGCACGGc -3'
miRNA:   3'- -GGGGuuaCAGGGGC--UGU-UUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 95426 0.76 0.667949
Target:  5'- cCCCCGccGUCCCCGugAccacauaagccgaGAAGgGCAGg -3'
miRNA:   3'- -GGGGUuaCAGGGGCugU-------------UUUCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 106666 0.76 0.699962
Target:  5'- gCCCCucccgCCCCGGCccAGGCGCAGa -3'
miRNA:   3'- -GGGGuuacaGGGGCUGuuUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 105821 0.76 0.710181
Target:  5'- aCCCAGggGUCCCCGGCcgacauccGGAGGCGCu- -3'
miRNA:   3'- gGGGUUa-CAGGGGCUG--------UUUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 94015 0.75 0.730402
Target:  5'- cUCCCAcGUGcggCCCGGCAGGGGCACGGc -3'
miRNA:   3'- -GGGGU-UACag-GGGCUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 44982 0.75 0.740385
Target:  5'- aCCUcGUG-CgCCGACGGAGGCGCAGa -3'
miRNA:   3'- gGGGuUACaGgGGCUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 64102 0.74 0.788629
Target:  5'- aCCUGggGUCCUCGAgGAuGGCACGGg -3'
miRNA:   3'- gGGGUuaCAGGGGCUgUUuUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 155569 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 149413 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 143257 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 152491 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 158648 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 146335 0.74 0.806968
Target:  5'- aCCCCAG-GUUCCUGugAAGAGCAa-- -3'
miRNA:   3'- -GGGGUUaCAGGGGCugUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 151992 0.73 0.833219
Target:  5'- cCCCCAccaccgucaggGUGUCUCgG-UAGAAGCACAGu -3'
miRNA:   3'- -GGGGU-----------UACAGGGgCuGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 15324 0.73 0.833219
Target:  5'- gCCCCGGUGUgcCCCUGGCG--GGCGCc- -3'
miRNA:   3'- -GGGGUUACA--GGGGCUGUuuUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 169663 0.73 0.848973
Target:  5'- gCCCCAGguuuggagaaugcUG-CCaCCGGcCAAGAGCGCAGa -3'
miRNA:   3'- -GGGGUU-------------ACaGG-GGCU-GUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 161753 0.73 0.849782
Target:  5'- gCCCGccGUCCCCGAaAGAGGCAa-- -3'
miRNA:   3'- gGGGUuaCAGGGGCUgUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 120777 0.72 0.857759
Target:  5'- gCCUC-AUGUCCCUGGCGGAGGuCGCc- -3'
miRNA:   3'- -GGGGuUACAGGGGCUGUUUUC-GUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.