miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 325 0.66 0.993091
Target:  5'- gCCCAGcUGUCauucuCCCGGCcaacGGGAGCAgAGg -3'
miRNA:   3'- gGGGUU-ACAG-----GGGCUG----UUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 459 0.67 0.983071
Target:  5'- cCCCCGG-GUcCCCCGGCAc--GCGcCGGg -3'
miRNA:   3'- -GGGGUUaCA-GGGGCUGUuuuCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 852 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 1256 0.67 0.983071
Target:  5'- gCCCAGcUGucauucUCCCCGccaACGGGAGCAgAGg -3'
miRNA:   3'- gGGGUU-AC------AGGGGC---UGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 1390 0.67 0.983071
Target:  5'- cCCCCGG-GUcCCCCGGCAc--GCGcCGGg -3'
miRNA:   3'- -GGGGUUaCA-GGGGCUGUuuuCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 1784 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 2188 0.67 0.983071
Target:  5'- gCCCAGcUGucauucUCCCCGccaACGGGAGCAgAGg -3'
miRNA:   3'- gGGGUU-AC------AGGGGC---UGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 2322 0.67 0.983071
Target:  5'- cCCCCGG-GUcCCCCGGCAc--GCGcCGGg -3'
miRNA:   3'- -GGGGUUaCA-GGGGCUGUuuuCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 2716 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 3120 0.67 0.983071
Target:  5'- gCCCAGcUGucauucUCCCCGccaACGGGAGCAgAGg -3'
miRNA:   3'- gGGGUU-AC------AGGGGC---UGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 3254 0.67 0.983071
Target:  5'- cCCCCGG-GUcCCCCGGCAc--GCGcCGGg -3'
miRNA:   3'- -GGGGUUaCA-GGGGCUGUuuuCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 3334 0.69 0.953624
Target:  5'- gCUCCAacGUGUUCCUGAUuguGAGGCAgCGGg -3'
miRNA:   3'- -GGGGU--UACAGGGGCUGu--UUUCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 3648 0.69 0.957548
Target:  5'- gCCCCGGgcccUCCCCGACAuccagggacuGGcCGCGGg -3'
miRNA:   3'- -GGGGUUac--AGGGGCUGUuu--------UC-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 4075 1.12 0.005785
Target:  5'- cCCCCAAUGUCCCCGACAAAAGCACAGg -3'
miRNA:   3'- -GGGGUUACAGGGGCUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 7286 0.66 0.993091
Target:  5'- cCUCCAAUGUCCCU-----AAGCACc- -3'
miRNA:   3'- -GGGGUUACAGGGGcuguuUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 8513 0.71 0.894342
Target:  5'- cCCaCCGggGUCCCgGGCGcgGGCGCGc -3'
miRNA:   3'- -GG-GGUuaCAGGGgCUGUuuUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 9631 0.67 0.986659
Target:  5'- aCCUCGGUcUCCCCcaGGCGcaugcGGCACAGg -3'
miRNA:   3'- -GGGGUUAcAGGGG--CUGUuu---UCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 12577 0.68 0.976384
Target:  5'- gCCCAuGUGUCCCC-ACA--AGCcCAGa -3'
miRNA:   3'- gGGGU-UACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 13946 0.69 0.961238
Target:  5'- uCCCCGAgg-CCCCGGCuccuGAGCuCAu -3'
miRNA:   3'- -GGGGUUacaGGGGCUGuu--UUCGuGUc -5'
28931 5' -51.4 NC_006146.1 + 14031 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.