miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 66549 0.8 0.484889
Target:  5'- gCCCCGAUGUCUuuGAUcuuguGGCGCAGg -3'
miRNA:   3'- -GGGGUUACAGGggCUGuuu--UCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 42253 0.69 0.961238
Target:  5'- uCCCCGccGUCCCCGAaugcgggAGGAGgAUGGg -3'
miRNA:   3'- -GGGGUuaCAGGGGCUg------UUUUCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 20101 0.69 0.9647
Target:  5'- uCCCCGAgg-CCCCGGCuccuGAGCuCAc -3'
miRNA:   3'- -GGGGUUacaGGGGCUGuu--UUCGuGUc -5'
28931 5' -51.4 NC_006146.1 + 128924 0.66 0.994833
Target:  5'- cCCCCAGUGgaCgaGGCAguAGAGCACAc -3'
miRNA:   3'- -GGGGUUACagGggCUGU--UUUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 151992 0.73 0.833219
Target:  5'- cCCCCAccaccgucaggGUGUCUCgG-UAGAAGCACAGu -3'
miRNA:   3'- -GGGGU-----------UACAGGGgCuGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 161753 0.73 0.849782
Target:  5'- gCCCGccGUCCCCGAaAGAGGCAa-- -3'
miRNA:   3'- gGGGUuaCAGGGGCUgUUUUCGUguc -5'
28931 5' -51.4 NC_006146.1 + 145030 0.72 0.880392
Target:  5'- aCCaCAAUGUUCCCGgGCAGcguGAGCGCGc -3'
miRNA:   3'- gGG-GUUACAGGGGC-UGUU---UUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 137882 0.71 0.894342
Target:  5'- gCCCCGGgccggcaggggGUCCCCGugGAcaGGGC-CGGg -3'
miRNA:   3'- -GGGGUUa----------CAGGGGCugUU--UUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 128633 0.7 0.930383
Target:  5'- uCCCCGGUGUCgCCCaGCu-GAGC-CAGc -3'
miRNA:   3'- -GGGGUUACAG-GGGcUGuuUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 40833 0.69 0.961238
Target:  5'- cCCCUggUGUUCCCGGCc-GAGCu--- -3'
miRNA:   3'- -GGGGuuACAGGGGCUGuuUUCGuguc -5'
28931 5' -51.4 NC_006146.1 + 3334 0.69 0.953624
Target:  5'- gCUCCAacGUGUUCCUGAUuguGAGGCAgCGGg -3'
miRNA:   3'- -GGGGU--UACAGGGGCUGu--UUUCGU-GUC- -5'
28931 5' -51.4 NC_006146.1 + 150486 0.71 0.924994
Target:  5'- cCCCUggUagccGUCCCUGuCGGAGGCGgAGg -3'
miRNA:   3'- -GGGGuuA----CAGGGGCuGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 95426 0.76 0.667949
Target:  5'- cCCCCGccGUCCCCGugAccacauaagccgaGAAGgGCAGg -3'
miRNA:   3'- -GGGGUuaCAGGGGCugU-------------UUUCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 49580 0.69 0.957548
Target:  5'- gCCUCGAUGUCCUCcaggauGACGcgGAGGCGCu- -3'
miRNA:   3'- -GGGGUUACAGGGG------CUGU--UUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 106666 0.76 0.699962
Target:  5'- gCCCCucccgCCCCGGCccAGGCGCAGa -3'
miRNA:   3'- -GGGGuuacaGGGGCUGuuUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 34150 0.71 0.907338
Target:  5'- cUCCCGGaG-CCCCGGCGAGGGUGgGGg -3'
miRNA:   3'- -GGGGUUaCaGGGGCUGUUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 13946 0.69 0.961238
Target:  5'- uCCCCGAgg-CCCCGGCuccuGAGCuCAu -3'
miRNA:   3'- -GGGGUUacaGGGGCUGuu--UUCGuGUc -5'
28931 5' -51.4 NC_006146.1 + 17023 0.69 0.9647
Target:  5'- uCCCCGAgg-CCCCGGCuccuGAGCuCAc -3'
miRNA:   3'- -GGGGUUacaGGGGCUGuu--UUCGuGUc -5'
28931 5' -51.4 NC_006146.1 + 94015 0.75 0.730402
Target:  5'- cUCCCAcGUGcggCCCGGCAGGGGCACGGc -3'
miRNA:   3'- -GGGGU-UACag-GGGCUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 57181 0.72 0.880392
Target:  5'- aCCCCAGUGggccCCCUGGuggagaacauCAAGAGCACc- -3'
miRNA:   3'- -GGGGUUACa---GGGGCU----------GUUUUCGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.