miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 5' -58 NC_006146.1 + 3750 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 954 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 1886 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 2818 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 87979 0.76 0.272832
Target:  5'- cGAGGCCUuuuuugauguUGGCccuCGGUGCCCACUUg -3'
miRNA:   3'- cUUCCGGG----------ACCGu--GUCACGGGUGAAa -5'
28932 5' -58 NC_006146.1 + 41774 0.75 0.328713
Target:  5'- cGGAGGCCCUGcGCcCGGgcGCCCGCUc- -3'
miRNA:   3'- -CUUCCGGGAC-CGuGUCa-CGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 42124 0.73 0.375898
Target:  5'- cGAGGGCCuCUGGCACGccGUGUCC-CUg- -3'
miRNA:   3'- -CUUCCGG-GACCGUGU--CACGGGuGAaa -5'
28932 5' -58 NC_006146.1 + 153945 0.73 0.379202
Target:  5'- gGAAGGCCCgccgcuccccguugGGCACGGUGCCUc---- -3'
miRNA:   3'- -CUUCCGGGa-------------CCGUGUCACGGGugaaa -5'
28932 5' -58 NC_006146.1 + 139396 0.73 0.391764
Target:  5'- aGAAGGCCCccacGGCGCcgggggaGGUGCCUGCUg- -3'
miRNA:   3'- -CUUCCGGGa---CCGUG-------UCACGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 105877 0.73 0.401147
Target:  5'- -uGGGCCCUGGgACcguagaagAGUGCCCAUa-- -3'
miRNA:   3'- cuUCCGGGACCgUG--------UCACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 15033 0.71 0.492549
Target:  5'- aGGGGCgCCUGGC-CAGgGCCCGCc-- -3'
miRNA:   3'- cUUCCG-GGACCGuGUCaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 139441 0.7 0.541712
Target:  5'- aGAAGGCCCc--CACGGUGCCCGg--- -3'
miRNA:   3'- -CUUCCGGGaccGUGUCACGGGUgaaa -5'
28932 5' -58 NC_006146.1 + 21070 0.7 0.551751
Target:  5'- cGAGGCCCUGGCc----GCCCACa-- -3'
miRNA:   3'- cUUCCGGGACCGugucaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 61942 0.7 0.570972
Target:  5'- cAGGGCCCUGGUccacgggACGGUGCaCAUUUUc -3'
miRNA:   3'- cUUCCGGGACCG-------UGUCACGgGUGAAA- -5'
28932 5' -58 NC_006146.1 + 155872 0.7 0.571989
Target:  5'- -cGGGCCCUGGC-CAGgcGCCC-CUc- -3'
miRNA:   3'- cuUCCGGGACCGuGUCa-CGGGuGAaa -5'
28932 5' -58 NC_006146.1 + 116875 0.7 0.582176
Target:  5'- --cGGCCCggccaGGCgcaGCAGUGCCUGCUc- -3'
miRNA:   3'- cuuCCGGGa----CCG---UGUCACGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 159996 0.69 0.612927
Target:  5'- -cGGGCCUuucaguggUGGCGCAuUGCCCACc-- -3'
miRNA:   3'- cuUCCGGG--------ACCGUGUcACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 41626 0.69 0.623216
Target:  5'- -uGGGCCCgGGCGCAGaccaGCcCCACa-- -3'
miRNA:   3'- cuUCCGGGaCCGUGUCa---CG-GGUGaaa -5'
28932 5' -58 NC_006146.1 + 161722 0.69 0.633512
Target:  5'- aGAAGGCUUgggggugggUGGCACGGUgggaGCCCGCc-- -3'
miRNA:   3'- -CUUCCGGG---------ACCGUGUCA----CGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 10227 0.68 0.654093
Target:  5'- --cGGCCCUGGuCAU-GUGCCgGCUc- -3'
miRNA:   3'- cuuCCGGGACC-GUGuCACGGgUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.