miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 5' -58 NC_006146.1 + 954 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 1886 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 2818 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 3750 1.05 0.002968
Target:  5'- cGAAGGCCCUGGCACAGUGCCCACUUUc -3'
miRNA:   3'- -CUUCCGGGACCGUGUCACGGGUGAAA- -5'
28932 5' -58 NC_006146.1 + 4874 0.67 0.754506
Target:  5'- cGggGGCCaCaGGCACccccgaUGCCCACa-- -3'
miRNA:   3'- -CuuCCGG-GaCCGUGuc----ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 9483 0.67 0.715128
Target:  5'- cGGGGCCacacccgcCUGGCACAG-GCCUAUg-- -3'
miRNA:   3'- cUUCCGG--------GACCGUGUCaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 10227 0.68 0.654093
Target:  5'- --cGGCCCUGGuCAU-GUGCCgGCUc- -3'
miRNA:   3'- cuuCCGGGACC-GUGuCACGGgUGAaa -5'
28932 5' -58 NC_006146.1 + 12934 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 15033 0.71 0.492549
Target:  5'- aGGGGCgCCUGGC-CAGgGCCCGCc-- -3'
miRNA:   3'- cUUCCG-GGACCGuGUCaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 15066 0.67 0.7641
Target:  5'- aGGAGGCaCUGGCGgGG-GCuCCGCUg- -3'
miRNA:   3'- -CUUCCGgGACCGUgUCaCG-GGUGAaa -5'
28932 5' -58 NC_006146.1 + 16011 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 19089 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 20189 0.66 0.809227
Target:  5'- aGAGGGCCCccgggGGCGCAGgagGCUgggcaugUACUg- -3'
miRNA:   3'- -CUUCCGGGa----CCGUGUCa--CGG-------GUGAaa -5'
28932 5' -58 NC_006146.1 + 21070 0.7 0.551751
Target:  5'- cGAGGCCCUGGCc----GCCCACa-- -3'
miRNA:   3'- cUUCCGGGACCGugucaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 22167 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 23468 0.68 0.674603
Target:  5'- cGAGGCCCUGGCcguggccagguACGGgcugguggGCUCGCUc- -3'
miRNA:   3'- cUUCCGGGACCG-----------UGUCa-------CGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 25105 0.67 0.725103
Target:  5'- aGGGGCggcucaCCUGGUACauAGUGCCCAUc-- -3'
miRNA:   3'- cUUCCG------GGACCGUG--UCACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 25245 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 28323 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 39041 0.66 0.818858
Target:  5'- uGggGGCCagcaGGCAgGG-GCCCugUg- -3'
miRNA:   3'- -CuuCCGGga--CCGUgUCaCGGGugAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.