miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 5' -58 NC_006146.1 + 153945 0.73 0.379202
Target:  5'- gGAAGGCCCgccgcuccccguugGGCACGGUGCCUc---- -3'
miRNA:   3'- -CUUCCGGGa-------------CCGUGUCACGGGugaaa -5'
28932 5' -58 NC_006146.1 + 108429 0.67 0.734998
Target:  5'- uGgcGGCCaggUGGaCGCAGUGCCCGu--- -3'
miRNA:   3'- -CuuCCGGg--ACC-GUGUCACGGGUgaaa -5'
28932 5' -58 NC_006146.1 + 86318 0.67 0.7641
Target:  5'- aGGAGGCCCUgGGCAgGGUcuugaucaggGCCCuCa-- -3'
miRNA:   3'- -CUUCCGGGA-CCGUgUCA----------CGGGuGaaa -5'
28932 5' -58 NC_006146.1 + 39041 0.66 0.818858
Target:  5'- uGggGGCCagcaGGCAgGG-GCCCugUg- -3'
miRNA:   3'- -CuuCCGGga--CCGUgUCaCGGGugAaa -5'
28932 5' -58 NC_006146.1 + 41626 0.69 0.623216
Target:  5'- -uGGGCCCgGGCGCAGaccaGCcCCACa-- -3'
miRNA:   3'- cuUCCGGGaCCGUGUCa---CG-GGUGaaa -5'
28932 5' -58 NC_006146.1 + 161722 0.69 0.633512
Target:  5'- aGAAGGCUUgggggugggUGGCACGGUgggaGCCCGCc-- -3'
miRNA:   3'- -CUUCCGGG---------ACCGUGUCA----CGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 167659 0.68 0.664361
Target:  5'- cGggGGCCCgGGgGC-GUGuCCCGCg-- -3'
miRNA:   3'- -CuuCCGGGaCCgUGuCAC-GGGUGaaa -5'
28932 5' -58 NC_006146.1 + 69595 0.68 0.672557
Target:  5'- -cAGGUCCUGGgGCAGcgagacguccagGCCCACg-- -3'
miRNA:   3'- cuUCCGGGACCgUGUCa-----------CGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 12934 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 28323 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 19089 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 9483 0.67 0.715128
Target:  5'- cGGGGCCacacccgcCUGGCACAG-GCCUAUg-- -3'
miRNA:   3'- cUUCCGG--------GACCGUGUCaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 105877 0.73 0.401147
Target:  5'- -uGGGCCCUGGgACcguagaagAGUGCCCAUa-- -3'
miRNA:   3'- cuUCCGGGACCgUG--------UCACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 22167 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 155872 0.7 0.571989
Target:  5'- -cGGGCCCUGGC-CAGgcGCCC-CUc- -3'
miRNA:   3'- cuUCCGGGACCGuGUCa-CGGGuGAaa -5'
28932 5' -58 NC_006146.1 + 154993 0.68 0.694972
Target:  5'- cAGGGCCC-GGCACAGaaguUGCUgGCUc- -3'
miRNA:   3'- cUUCCGGGaCCGUGUC----ACGGgUGAaa -5'
28932 5' -58 NC_006146.1 + 25245 0.67 0.715128
Target:  5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3'
miRNA:   3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5'
28932 5' -58 NC_006146.1 + 106679 0.67 0.754506
Target:  5'- --cGGCCCaGGCGCAgauGUGCCUcCUg- -3'
miRNA:   3'- cuuCCGGGaCCGUGU---CACGGGuGAaa -5'
28932 5' -58 NC_006146.1 + 116875 0.7 0.582176
Target:  5'- --cGGCCCggccaGGCgcaGCAGUGCCUGCUc- -3'
miRNA:   3'- cuuCCGGGa----CCG---UGUCACGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 50730 0.68 0.664361
Target:  5'- cGAGGGCCCggucggGGUACGuGUGUCCGg--- -3'
miRNA:   3'- -CUUCCGGGa-----CCGUGU-CACGGGUgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.