miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 42697 0.7 0.737689
Target:  5'- gAGCGucUGGCCC-GGcGCCgCGGCGCCc -3'
miRNA:   3'- gUUGCu-ACUGGGaUC-CGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 18505 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 21583 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 24661 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 27739 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 124815 0.7 0.747342
Target:  5'- gCGACGGUGcuucGCCCccgAGGCCcugCAGCaGCUa -3'
miRNA:   3'- -GUUGCUAC----UGGGa--UCCGGa--GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 125162 0.7 0.747342
Target:  5'- uUAACGugaaGACUCUGGGCCaggUCAGgGUCg -3'
miRNA:   3'- -GUUGCua--CUGGGAUCCGG---AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 41476 0.7 0.756895
Target:  5'- gCGGCGGUGAUguugCUGGGCCUUggGGUGCg -3'
miRNA:   3'- -GUUGCUACUGg---GAUCCGGAG--UCGCGg -5'
28933 5' -56 NC_006146.1 + 113453 0.7 0.760687
Target:  5'- aAACG-UGAgCCgcGGCCcggcuuccucguaugUCAGCGCCa -3'
miRNA:   3'- gUUGCuACUgGGauCCGG---------------AGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 72437 0.7 0.76634
Target:  5'- -cGCGGacUGACCCagagacuGGCCcccgggCGGCGCCg -3'
miRNA:   3'- guUGCU--ACUGGGau-----CCGGa-----GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 114710 0.7 0.76634
Target:  5'- -cGCGAgacccgGGCCCUGgcGGCCgaguaUCGGCGCa -3'
miRNA:   3'- guUGCUa-----CUGGGAU--CCGG-----AGUCGCGg -5'
28933 5' -56 NC_006146.1 + 19472 0.7 0.76634
Target:  5'- aCAACGAcuuugUGACCUUuGGCUgguaCAGCuGCCg -3'
miRNA:   3'- -GUUGCU-----ACUGGGAuCCGGa---GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 114761 0.69 0.775667
Target:  5'- -cGCGGggagGGCUCUcGGUCUCGGgGCCc -3'
miRNA:   3'- guUGCUa---CUGGGAuCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 75364 0.69 0.775667
Target:  5'- aGAgGAUaggGACCCU-GGCCa-GGCGCCg -3'
miRNA:   3'- gUUgCUA---CUGGGAuCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 99446 0.69 0.775667
Target:  5'- -cAUGA-GGCCCUcGcuCCUCGGCGCCa -3'
miRNA:   3'- guUGCUaCUGGGAuCc-GGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 151464 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 142230 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 145308 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 120581 0.69 0.784868
Target:  5'- gGAUGGcaaguuUGACCUggacaAGGCCcggCGGCGCCu -3'
miRNA:   3'- gUUGCU------ACUGGGa----UCCGGa--GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 148386 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.