Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28933 | 5' | -56 | NC_006146.1 | + | 42697 | 0.7 | 0.737689 |
Target: 5'- gAGCGucUGGCCC-GGcGCCgCGGCGCCc -3' miRNA: 3'- gUUGCu-ACUGGGaUC-CGGaGUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 18505 | 0.7 | 0.737689 |
Target: 5'- ------cGcCCCUGGGCCUCAG-GCCc -3' miRNA: 3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 21583 | 0.7 | 0.737689 |
Target: 5'- ------cGcCCCUGGGCCUCAG-GCCc -3' miRNA: 3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 24661 | 0.7 | 0.737689 |
Target: 5'- ------cGcCCCUGGGCCUCAG-GCCc -3' miRNA: 3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 27739 | 0.7 | 0.737689 |
Target: 5'- ------cGcCCCUGGGCCUCAG-GCCc -3' miRNA: 3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 124815 | 0.7 | 0.747342 |
Target: 5'- gCGACGGUGcuucGCCCccgAGGCCcugCAGCaGCUa -3' miRNA: 3'- -GUUGCUAC----UGGGa--UCCGGa--GUCG-CGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 125162 | 0.7 | 0.747342 |
Target: 5'- uUAACGugaaGACUCUGGGCCaggUCAGgGUCg -3' miRNA: 3'- -GUUGCua--CUGGGAUCCGG---AGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 41476 | 0.7 | 0.756895 |
Target: 5'- gCGGCGGUGAUguugCUGGGCCUUggGGUGCg -3' miRNA: 3'- -GUUGCUACUGg---GAUCCGGAG--UCGCGg -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 113453 | 0.7 | 0.760687 |
Target: 5'- aAACG-UGAgCCgcGGCCcggcuuccucguaugUCAGCGCCa -3' miRNA: 3'- gUUGCuACUgGGauCCGG---------------AGUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 72437 | 0.7 | 0.76634 |
Target: 5'- -cGCGGacUGACCCagagacuGGCCcccgggCGGCGCCg -3' miRNA: 3'- guUGCU--ACUGGGau-----CCGGa-----GUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 114710 | 0.7 | 0.76634 |
Target: 5'- -cGCGAgacccgGGCCCUGgcGGCCgaguaUCGGCGCa -3' miRNA: 3'- guUGCUa-----CUGGGAU--CCGG-----AGUCGCGg -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 19472 | 0.7 | 0.76634 |
Target: 5'- aCAACGAcuuugUGACCUUuGGCUgguaCAGCuGCCg -3' miRNA: 3'- -GUUGCU-----ACUGGGAuCCGGa---GUCG-CGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 114761 | 0.69 | 0.775667 |
Target: 5'- -cGCGGggagGGCUCUcGGUCUCGGgGCCc -3' miRNA: 3'- guUGCUa---CUGGGAuCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 75364 | 0.69 | 0.775667 |
Target: 5'- aGAgGAUaggGACCCU-GGCCa-GGCGCCg -3' miRNA: 3'- gUUgCUA---CUGGGAuCCGGagUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 99446 | 0.69 | 0.775667 |
Target: 5'- -cAUGA-GGCCCUcGcuCCUCGGCGCCa -3' miRNA: 3'- guUGCUaCUGGGAuCc-GGAGUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 151464 | 0.69 | 0.784868 |
Target: 5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3' miRNA: 3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 142230 | 0.69 | 0.784868 |
Target: 5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3' miRNA: 3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 145308 | 0.69 | 0.784868 |
Target: 5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3' miRNA: 3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 120581 | 0.69 | 0.784868 |
Target: 5'- gGAUGGcaaguuUGACCUggacaAGGCCcggCGGCGCCu -3' miRNA: 3'- gUUGCU------ACUGGGa----UCCGGa--GUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 148386 | 0.69 | 0.784868 |
Target: 5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3' miRNA: 3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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