miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 106457 0.72 0.607167
Target:  5'- aCAGCGcc-ACCCaAGGCuguCUCGGCGCCg -3'
miRNA:   3'- -GUUGCuacUGGGaUCCG---GAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 126388 0.72 0.627479
Target:  5'- cCAugGAU--CCCaccagGGGCCUCuGCGCCc -3'
miRNA:   3'- -GUugCUAcuGGGa----UCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 103018 0.72 0.637644
Target:  5'- aAGCGGauaaaUGACCuCUugcaGGGCCUCucauacAGCGCCg -3'
miRNA:   3'- gUUGCU-----ACUGG-GA----UCCGGAG------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 66210 0.72 0.647805
Target:  5'- gCGACGA-GAUCC-AGGCC-CAGCuGCCc -3'
miRNA:   3'- -GUUGCUaCUGGGaUCCGGaGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 121145 0.72 0.647805
Target:  5'- cCGGCGucUGGgCCUGGGCCgc-GCGCCc -3'
miRNA:   3'- -GUUGCu-ACUgGGAUCCGGaguCGCGG- -5'
28933 5' -56 NC_006146.1 + 146134 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 155368 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 152290 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 149212 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 143056 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 158447 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 162562 0.71 0.678182
Target:  5'- gGACGGUGGuCCCUAucaGCCUCuGCGUg -3'
miRNA:   3'- gUUGCUACU-GGGAUc--CGGAGuCGCGg -5'
28933 5' -56 NC_006146.1 + 120976 0.71 0.688244
Target:  5'- gGACGuccggGACCgaGuGGCCUCGGCgGCCu -3'
miRNA:   3'- gUUGCua---CUGGgaU-CCGGAGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 124158 0.71 0.708222
Target:  5'- aGGCGAgGACCCUGgccagcguGGCCUCcGCccGCCu -3'
miRNA:   3'- gUUGCUaCUGGGAU--------CCGGAGuCG--CGG- -5'
28933 5' -56 NC_006146.1 + 50896 0.7 0.71812
Target:  5'- uGGCGcgGGugcggCCUGGGCCUCcGUGCCc -3'
miRNA:   3'- gUUGCuaCUg----GGAUCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 122659 0.7 0.726966
Target:  5'- gCGGCGggGGCCCUccgcgcGGCgCUCAcccaggcGCGCCa -3'
miRNA:   3'- -GUUGCuaCUGGGAu-----CCG-GAGU-------CGCGG- -5'
28933 5' -56 NC_006146.1 + 38232 0.7 0.737689
Target:  5'- gCAGCGuaaaacugGACCC---GUCUCGGCGCCg -3'
miRNA:   3'- -GUUGCua------CUGGGaucCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 21583 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 24661 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 27739 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.