miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 17207 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 17595 0.74 0.517434
Target:  5'- gGGCGAccUGGCCC-GGGCCU-GGUGCCu -3'
miRNA:   3'- gUUGCU--ACUGGGaUCCGGAgUCGCGG- -5'
28933 5' -56 NC_006146.1 + 18505 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 18871 0.67 0.875356
Target:  5'- gGugGAcGugCggGGGCCUCAGCcCCc -3'
miRNA:   3'- gUugCUaCugGgaUCCGGAGUCGcGG- -5'
28933 5' -56 NC_006146.1 + 19067 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 19472 0.7 0.76634
Target:  5'- aCAACGAcuuugUGACCUUuGGCUgguaCAGCuGCCg -3'
miRNA:   3'- -GUUGCU-----ACUGGGAuCCGGa---GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 19945 0.67 0.895886
Target:  5'- --cCGGccuCCCUGGGCagaUCAGgGCCg -3'
miRNA:   3'- guuGCUacuGGGAUCCGg--AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 20285 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 20929 0.66 0.901651
Target:  5'- cCGACcugcaGGCCCUGGcccccacucccacGCCUgGGCGCCc -3'
miRNA:   3'- -GUUGcua--CUGGGAUC-------------CGGAgUCGCGG- -5'
28933 5' -56 NC_006146.1 + 21583 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 22145 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 22697 0.66 0.90228
Target:  5'- --cUGAUGuuCCUGGGCCUgAuGUGCUc -3'
miRNA:   3'- guuGCUACugGGAUCCGGAgU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 23063 0.67 0.875356
Target:  5'- gCAACGuc-GCCUUcaccGGCCUCAucuGCGCCu -3'
miRNA:   3'- -GUUGCuacUGGGAu---CCGGAGU---CGCGG- -5'
28933 5' -56 NC_006146.1 + 23330 0.73 0.556827
Target:  5'- -cGCGAguaUGGCCCUGcagaccGaCCUCAGCGCCu -3'
miRNA:   3'- guUGCU---ACUGGGAU------CcGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 23363 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 24661 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 25223 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 26441 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 26773 0.68 0.836931
Target:  5'- aGACGAcGuCCC-AGGUUgCGGCGCCa -3'
miRNA:   3'- gUUGCUaCuGGGaUCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 27739 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.