miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 220 0.68 0.820229
Target:  5'- gCGACGGUccccggggcGcCCCU-GGCCUCccccGCGCCg -3'
miRNA:   3'- -GUUGCUA---------CuGGGAuCCGGAGu---CGCGG- -5'
28933 5' -56 NC_006146.1 + 786 0.68 0.86059
Target:  5'- aCGACGGgacGCCCcgccGGCCcccccugCGGCGCCg -3'
miRNA:   3'- -GUUGCUac-UGGGau--CCGGa------GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 849 0.66 0.908445
Target:  5'- gGGCauaggGGCCCUAGGag-CAGCGCUu -3'
miRNA:   3'- gUUGcua--CUGGGAUCCggaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 2027 1.12 0.002023
Target:  5'- gCAACGAUGACCCUAGGCCUCAGCGCCa -3'
miRNA:   3'- -GUUGCUACUGGGAUCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 4073 0.66 0.930764
Target:  5'- -cACGcgGACCC-GGGCCgcgucgaCAGCaCCg -3'
miRNA:   3'- guUGCuaCUGGGaUCCGGa------GUCGcGG- -5'
28933 5' -56 NC_006146.1 + 5192 0.66 0.908445
Target:  5'- aGACGuuuuCCCUGGGCCUgGGggaGCUa -3'
miRNA:   3'- gUUGCuacuGGGAUCCGGAgUCg--CGG- -5'
28933 5' -56 NC_006146.1 + 6411 0.66 0.914377
Target:  5'- cCAugGGgu-CCCUuuGGCC-CAGgGCCa -3'
miRNA:   3'- -GUugCUacuGGGAu-CCGGaGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 6432 0.66 0.908445
Target:  5'- aAAUGGUagaGACCCUAGGUUgcgCGGCGg- -3'
miRNA:   3'- gUUGCUA---CUGGGAUCCGGa--GUCGCgg -5'
28933 5' -56 NC_006146.1 + 7201 0.68 0.828669
Target:  5'- -uGCGAgaugUGGCCCcaccaAGGCC-CAcGCGCCu -3'
miRNA:   3'- guUGCU----ACUGGGa----UCCGGaGU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 10242 0.69 0.811622
Target:  5'- gGGCGAgaaucuaaaGACCCUaAGGCUUCgcuugcgcaGGUGCCa -3'
miRNA:   3'- gUUGCUa--------CUGGGA-UCCGGAG---------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 11628 0.67 0.88242
Target:  5'- -uGCGAgGGCCCcgAGGCCcgcguggCGGCGUUg -3'
miRNA:   3'- guUGCUaCUGGGa-UCCGGa------GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 12157 0.66 0.922288
Target:  5'- gCAGCGGagaGACCCcuacgugaucucggGGGCCUCGG-GCUc -3'
miRNA:   3'- -GUUGCUa--CUGGGa-------------UCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 12348 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 12912 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 13984 0.68 0.828669
Target:  5'- uCAGCGccGccACCC-AGGCCUCGGCcggGCUg -3'
miRNA:   3'- -GUUGCuaC--UGGGaUCCGGAGUCG---CGG- -5'
28933 5' -56 NC_006146.1 + 14129 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 15427 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 15750 0.66 0.930764
Target:  5'- gCAACG-UGGCCCU-GGCCcgcugcugCGaCGCCg -3'
miRNA:   3'- -GUUGCuACUGGGAuCCGGa-------GUcGCGG- -5'
28933 5' -56 NC_006146.1 + 15989 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 17141 0.68 0.86059
Target:  5'- uGACGGUGGgcauggcccuCCCUGGaGCCUUcaAGUGCa -3'
miRNA:   3'- gUUGCUACU----------GGGAUC-CGGAG--UCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.