miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 18505 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 126388 0.72 0.627479
Target:  5'- cCAugGAU--CCCaccagGGGCCUCuGCGCCc -3'
miRNA:   3'- -GUugCUAcuGGGa----UCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 103018 0.72 0.637644
Target:  5'- aAGCGGauaaaUGACCuCUugcaGGGCCUCucauacAGCGCCg -3'
miRNA:   3'- gUUGCU-----ACUGG-GA----UCCGGAG------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 66210 0.72 0.647805
Target:  5'- gCGACGA-GAUCC-AGGCC-CAGCuGCCc -3'
miRNA:   3'- -GUUGCUaCUGGGaUCCGGaGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 121145 0.72 0.647805
Target:  5'- cCGGCGucUGGgCCUGGGCCgc-GCGCCc -3'
miRNA:   3'- -GUUGCu-ACUgGGAUCCGGaguCGCGG- -5'
28933 5' -56 NC_006146.1 + 162562 0.71 0.678182
Target:  5'- gGACGGUGGuCCCUAucaGCCUCuGCGUg -3'
miRNA:   3'- gUUGCUACU-GGGAUc--CGGAGuCGCGg -5'
28933 5' -56 NC_006146.1 + 38232 0.7 0.737689
Target:  5'- gCAGCGuaaaacugGACCC---GUCUCGGCGCCg -3'
miRNA:   3'- -GUUGCua------CUGGGaucCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 12348 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 15427 0.7 0.737689
Target:  5'- ------cGcCCCUGGGCCUCAG-GCCc -3'
miRNA:   3'- guugcuaCuGGGAUCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 106457 0.72 0.607167
Target:  5'- aCAGCGcc-ACCCaAGGCuguCUCGGCGCCg -3'
miRNA:   3'- -GUUGCuacUGGGaUCCG---GAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 47327 0.73 0.576853
Target:  5'- gGAUGAUGGCCUccagccGGGCCa-GGCGCCg -3'
miRNA:   3'- gUUGCUACUGGGa-----UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 157324 0.73 0.546888
Target:  5'- uCAugGAUGAgCCCccGGCCUgcuugcgcagccCGGCGCCc -3'
miRNA:   3'- -GUugCUACU-GGGauCCGGA------------GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 113415 0.77 0.357954
Target:  5'- -cGCGGUGGCUCggucaGGGUCUCGGCGUCu -3'
miRNA:   3'- guUGCUACUGGGa----UCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 110165 0.77 0.373917
Target:  5'- uGGCGGaucucUG-UCCaGGGCCUCAGCGCCg -3'
miRNA:   3'- gUUGCU-----ACuGGGaUCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 43232 0.76 0.407261
Target:  5'- gCAGCG--GACCUUuggGGuGCCUCGGCGCCa -3'
miRNA:   3'- -GUUGCuaCUGGGA---UC-CGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 121325 0.75 0.451458
Target:  5'- aCAGCccc-ACCCU-GGCCUCAGCGCUg -3'
miRNA:   3'- -GUUGcuacUGGGAuCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 53012 0.75 0.469858
Target:  5'- -----cUGGCCCUGGGCCUCAcGCGgCu -3'
miRNA:   3'- guugcuACUGGGAUCCGGAGU-CGCgG- -5'
28933 5' -56 NC_006146.1 + 56312 0.74 0.498154
Target:  5'- ---aGGUGGCCC-AGGCCguagCuGCGCCg -3'
miRNA:   3'- guugCUACUGGGaUCCGGa---GuCGCGG- -5'
28933 5' -56 NC_006146.1 + 53167 0.74 0.498154
Target:  5'- gCGGCGGUGGCCggaaggCUcGGCCUCGGCcCCg -3'
miRNA:   3'- -GUUGCUACUGG------GAuCCGGAGUCGcGG- -5'
28933 5' -56 NC_006146.1 + 53858 0.74 0.517434
Target:  5'- aGGCGGUaggcGACgCUGGcCCUCAGCGCCc -3'
miRNA:   3'- gUUGCUA----CUGgGAUCcGGAGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.