miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 39679 0.85 0.132998
Target:  5'- aGGCGGcgGGCuCCUGGGCCUgCAGCGCCg -3'
miRNA:   3'- gUUGCUa-CUG-GGAUCCGGA-GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 50896 0.7 0.71812
Target:  5'- uGGCGcgGGugcggCCUGGGCCUCcGUGCCc -3'
miRNA:   3'- gUUGCuaCUg----GGAUCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 49755 0.7 0.737689
Target:  5'- gGGCGcgcGGCCC-AGGCC-CAGaCGCCg -3'
miRNA:   3'- gUUGCua-CUGGGaUCCGGaGUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 129299 0.66 0.930764
Target:  5'- cCAGCGGaccaGCCCcccGGGCCUCucCGCCu -3'
miRNA:   3'- -GUUGCUac--UGGGa--UCCGGAGucGCGG- -5'
28933 5' -56 NC_006146.1 + 41052 0.74 0.507755
Target:  5'- -cGCGgcGGCCCUggGGGCCUCGGgGUg -3'
miRNA:   3'- guUGCuaCUGGGA--UCCGGAGUCgCGg -5'
28933 5' -56 NC_006146.1 + 44180 0.74 0.507755
Target:  5'- gGGCGGUG-CCCUccaGCCUCuGCGCCc -3'
miRNA:   3'- gUUGCUACuGGGAuc-CGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 23330 0.73 0.556827
Target:  5'- -cGCGAguaUGGCCCUGcagaccGaCCUCAGCGCCu -3'
miRNA:   3'- guUGCU---ACUGGGAU------CcGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 115503 0.73 0.597034
Target:  5'- gGGCGAcuacgccgUGAUgCU-GGCCUCGGUGCCc -3'
miRNA:   3'- gUUGCU--------ACUGgGAuCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 149212 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 124158 0.71 0.708222
Target:  5'- aGGCGAgGACCCUGgccagcguGGCCUCcGCccGCCu -3'
miRNA:   3'- gUUGCUaCUGGGAU--------CCGGAGuCG--CGG- -5'
28933 5' -56 NC_006146.1 + 155368 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 146134 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 71950 0.76 0.407261
Target:  5'- cCGACGAguuUG-UCCUGGGCUUCguGGCGCCg -3'
miRNA:   3'- -GUUGCU---ACuGGGAUCCGGAG--UCGCGG- -5'
28933 5' -56 NC_006146.1 + 158447 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 56734 0.75 0.488634
Target:  5'- -cAUGGUGACCCUgcugcccaGGGCCagCAuGCGCCu -3'
miRNA:   3'- guUGCUACUGGGA--------UCCGGa-GU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 143056 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 120976 0.71 0.688244
Target:  5'- gGACGuccggGACCgaGuGGCCUCGGCgGCCu -3'
miRNA:   3'- gUUGCua---CUGGgaU-CCGGAGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 122659 0.7 0.726966
Target:  5'- gCGGCGggGGCCCUccgcgcGGCgCUCAcccaggcGCGCCa -3'
miRNA:   3'- -GUUGCuaCUGGGAu-----CCG-GAGU-------CGCGG- -5'
28933 5' -56 NC_006146.1 + 55655 0.74 0.498154
Target:  5'- -cACGGUGAauCCCUGGGCCUCucaGCUg -3'
miRNA:   3'- guUGCUACU--GGGAUCCGGAGucgCGG- -5'
28933 5' -56 NC_006146.1 + 17595 0.74 0.517434
Target:  5'- gGGCGAccUGGCCC-GGGCCU-GGUGCCu -3'
miRNA:   3'- gUUGCU--ACUGGGaUCCGGAgUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.