miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 6432 0.66 0.908445
Target:  5'- aAAUGGUagaGACCCUAGGUUgcgCGGCGg- -3'
miRNA:   3'- gUUGCUA---CUGGGAUCCGGa--GUCGCgg -5'
28933 5' -56 NC_006146.1 + 59238 0.66 0.907839
Target:  5'- gGAC-AUGGCCUccaUGGGCCuggguguUCAGgGCCu -3'
miRNA:   3'- gUUGcUACUGGG---AUCCGG-------AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 141746 0.66 0.90228
Target:  5'- gGACGGUGcACCgggaAGG-CUCAGCGUCu -3'
miRNA:   3'- gUUGCUAC-UGGga--UCCgGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 15989 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 128176 0.66 0.90228
Target:  5'- gCAGCGAcgccgggaggcGGCCCagggGGGCgCcgCGGCGCCg -3'
miRNA:   3'- -GUUGCUa----------CUGGGa---UCCG-Ga-GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 90570 0.66 0.908445
Target:  5'- ---aGAaGACCCgggagaAGGCCcCAGuCGCCa -3'
miRNA:   3'- guugCUaCUGGGa-----UCCGGaGUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 95082 0.66 0.90228
Target:  5'- cUggUGcAUGuCCCgcaGGGCCUCgaaggcGGCGCCc -3'
miRNA:   3'- -GuuGC-UACuGGGa--UCCGGAG------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 19067 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 48820 0.66 0.90228
Target:  5'- gGGCGGUGuCCagaaAGGCCuUCAGCuGCUc -3'
miRNA:   3'- gUUGCUACuGGga--UCCGG-AGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 52563 0.66 0.907839
Target:  5'- ---aGAUGuucacgcGCCCgccGGcCCUCAGCGUCa -3'
miRNA:   3'- guugCUAC-------UGGGau-CC-GGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 849 0.66 0.908445
Target:  5'- gGGCauaggGGCCCUAGGag-CAGCGCUu -3'
miRNA:   3'- gUUGcua--CUGGGAUCCggaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 22145 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 156227 0.66 0.914377
Target:  5'- aGACGcgGGCCCccucGGCCguggacggGGUGCCg -3'
miRNA:   3'- gUUGCuaCUGGGau--CCGGag------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 86319 0.66 0.914377
Target:  5'- ---gGA-GGCCCUGGGCagggucuugaUCAGgGCCc -3'
miRNA:   3'- guugCUaCUGGGAUCCGg---------AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 12912 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 54712 0.66 0.908445
Target:  5'- gGACGGcgGGCCC-GGGUCagGGCgGCCg -3'
miRNA:   3'- gUUGCUa-CUGGGaUCCGGagUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 25223 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 5192 0.66 0.908445
Target:  5'- aGACGuuuuCCCUGGGCCUgGGggaGCUa -3'
miRNA:   3'- gUUGCuacuGGGAUCCGGAgUCg--CGG- -5'
28933 5' -56 NC_006146.1 + 129299 0.66 0.930764
Target:  5'- cCAGCGGaccaGCCCcccGGGCCUCucCGCCu -3'
miRNA:   3'- -GUUGCUac--UGGGa--UCCGGAGucGCGG- -5'
28933 5' -56 NC_006146.1 + 28301 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.