miRNA display CGI


Results 1 - 20 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 2027 1.12 0.002023
Target:  5'- gCAACGAUGACCCUAGGCCUCAGCGCCa -3'
miRNA:   3'- -GUUGCUACUGGGAUCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 39679 0.85 0.132998
Target:  5'- aGGCGGcgGGCuCCUGGGCCUgCAGCGCCg -3'
miRNA:   3'- gUUGCUa-CUG-GGAUCCGGA-GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 113415 0.77 0.357954
Target:  5'- -cGCGGUGGCUCggucaGGGUCUCGGCGUCu -3'
miRNA:   3'- guUGCUACUGGGa----UCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 110165 0.77 0.373917
Target:  5'- uGGCGGaucucUG-UCCaGGGCCUCAGCGCCg -3'
miRNA:   3'- gUUGCU-----ACuGGGaUCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 43232 0.76 0.407261
Target:  5'- gCAGCG--GACCUUuggGGuGCCUCGGCGCCa -3'
miRNA:   3'- -GUUGCuaCUGGGA---UC-CGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 71950 0.76 0.407261
Target:  5'- cCGACGAguuUG-UCCUGGGCUUCguGGCGCCg -3'
miRNA:   3'- -GUUGCU---ACuGGGAUCCGGAG--UCGCGG- -5'
28933 5' -56 NC_006146.1 + 121325 0.75 0.451458
Target:  5'- aCAGCccc-ACCCU-GGCCUCAGCGCUg -3'
miRNA:   3'- -GUUGcuacUGGGAuCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 53012 0.75 0.469858
Target:  5'- -----cUGGCCCUGGGCCUCAcGCGgCu -3'
miRNA:   3'- guugcuACUGGGAUCCGGAGU-CGCgG- -5'
28933 5' -56 NC_006146.1 + 56734 0.75 0.488634
Target:  5'- -cAUGGUGACCCUgcugcccaGGGCCagCAuGCGCCu -3'
miRNA:   3'- guUGCUACUGGGA--------UCCGGa-GU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 55655 0.74 0.498154
Target:  5'- -cACGGUGAauCCCUGGGCCUCucaGCUg -3'
miRNA:   3'- guUGCUACU--GGGAUCCGGAGucgCGG- -5'
28933 5' -56 NC_006146.1 + 56312 0.74 0.498154
Target:  5'- ---aGGUGGCCC-AGGCCguagCuGCGCCg -3'
miRNA:   3'- guugCUACUGGGaUCCGGa---GuCGCGG- -5'
28933 5' -56 NC_006146.1 + 53167 0.74 0.498154
Target:  5'- gCGGCGGUGGCCggaaggCUcGGCCUCGGCcCCg -3'
miRNA:   3'- -GUUGCUACUGG------GAuCCGGAGUCGcGG- -5'
28933 5' -56 NC_006146.1 + 44180 0.74 0.507755
Target:  5'- gGGCGGUG-CCCUccaGCCUCuGCGCCc -3'
miRNA:   3'- gUUGCUACuGGGAuc-CGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 41052 0.74 0.507755
Target:  5'- -cGCGgcGGCCCUggGGGCCUCGGgGUg -3'
miRNA:   3'- guUGCuaCUGGGA--UCCGGAGUCgCGg -5'
28933 5' -56 NC_006146.1 + 17595 0.74 0.517434
Target:  5'- gGGCGAccUGGCCC-GGGCCU-GGUGCCu -3'
miRNA:   3'- gUUGCU--ACUGGGaUCCGGAgUCGCGG- -5'
28933 5' -56 NC_006146.1 + 53858 0.74 0.517434
Target:  5'- aGGCGGUaggcGACgCUGGcCCUCAGCGCCc -3'
miRNA:   3'- gUUGCUA----CUGgGAUCcGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 157324 0.73 0.546888
Target:  5'- uCAugGAUGAgCCCccGGCCUgcuugcgcagccCGGCGCCc -3'
miRNA:   3'- -GUugCUACU-GGGauCCGGA------------GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 23330 0.73 0.556827
Target:  5'- -cGCGAguaUGGCCCUGcagaccGaCCUCAGCGCCu -3'
miRNA:   3'- guUGCU---ACUGGGAU------CcGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 47327 0.73 0.576853
Target:  5'- gGAUGAUGGCCUccagccGGGCCa-GGCGCCg -3'
miRNA:   3'- gUUGCUACUGGGa-----UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 115503 0.73 0.597034
Target:  5'- gGGCGAcuacgccgUGAUgCU-GGCCUCGGUGCCc -3'
miRNA:   3'- gUUGCU--------ACUGgGAuCCGGAGUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.