miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 95082 0.66 0.90228
Target:  5'- cUggUGcAUGuCCCgcaGGGCCUCgaaggcGGCGCCc -3'
miRNA:   3'- -GuuGC-UACuGGGa--UCCGGAG------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 48820 0.66 0.90228
Target:  5'- gGGCGGUGuCCagaaAGGCCuUCAGCuGCUc -3'
miRNA:   3'- gUUGCUACuGGga--UCCGG-AGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 127560 0.66 0.914377
Target:  5'- -cACGGgcugcgccugcUGGCCCUGggcGGCCgaggCcGCGCCg -3'
miRNA:   3'- guUGCU-----------ACUGGGAU---CCGGa---GuCGCGG- -5'
28933 5' -56 NC_006146.1 + 22697 0.66 0.90228
Target:  5'- --cUGAUGuuCCUGGGCCUgAuGUGCUc -3'
miRNA:   3'- guuGCUACugGGAUCCGGAgU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 20929 0.66 0.901651
Target:  5'- cCGACcugcaGGCCCUGGcccccacucccacGCCUgGGCGCCc -3'
miRNA:   3'- -GUUGcua--CUGGGAUC-------------CGGAgUCGCGG- -5'
28933 5' -56 NC_006146.1 + 170082 0.66 0.930764
Target:  5'- uGGgGAUGGCCggcgggagGGGCC--GGCGCCg -3'
miRNA:   3'- gUUgCUACUGGga------UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 23363 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 25223 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 14129 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 20285 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 26441 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 4073 0.66 0.930764
Target:  5'- -cACGcgGACCC-GGGCCgcgucgaCAGCaCCg -3'
miRNA:   3'- guUGCuaCUGGGaUCCGGa------GUCGcGG- -5'
28933 5' -56 NC_006146.1 + 110292 0.66 0.908445
Target:  5'- -cAUGAUGGCCUcggcgUAGGCgUUCAuCGCCg -3'
miRNA:   3'- guUGCUACUGGG-----AUCCG-GAGUcGCGG- -5'
28933 5' -56 NC_006146.1 + 118228 0.66 0.900386
Target:  5'- gGACGAUGuCCUggacgagGGGgcgaggcuggacgcCCUCAuGCGCCa -3'
miRNA:   3'- gUUGCUACuGGGa------UCC--------------GGAGU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 29519 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 53019 0.66 0.914377
Target:  5'- --uCGAUGACCa---GCCUCgGGUGCCc -3'
miRNA:   3'- guuGCUACUGGgaucCGGAG-UCGCGG- -5'
28933 5' -56 NC_006146.1 + 146838 0.66 0.930764
Target:  5'- cCAGCGuagaGCCC-GGGCCuggcUCGGgGCCg -3'
miRNA:   3'- -GUUGCuac-UGGGaUCCGG----AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 167836 0.66 0.908445
Target:  5'- gGACGGU-AgCCUGGGCCaacgcgcucUCGGCGUa -3'
miRNA:   3'- gUUGCUAcUgGGAUCCGG---------AGUCGCGg -5'
28933 5' -56 NC_006146.1 + 6411 0.66 0.914377
Target:  5'- cCAugGGgu-CCCUuuGGCC-CAGgGCCa -3'
miRNA:   3'- -GUugCUacuGGGAu-CCGGaGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 129299 0.66 0.930764
Target:  5'- cCAGCGGaccaGCCCcccGGGCCUCucCGCCu -3'
miRNA:   3'- -GUUGCUac--UGGGa--UCCGGAGucGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.