miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 170082 0.66 0.930764
Target:  5'- uGGgGAUGGCCggcgggagGGGCC--GGCGCCg -3'
miRNA:   3'- gUUgCUACUGGga------UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 167836 0.66 0.908445
Target:  5'- gGACGGU-AgCCUGGGCCaacgcgcucUCGGCGUa -3'
miRNA:   3'- gUUGCUAcUgGGAUCCGG---------AGUCGCGg -5'
28933 5' -56 NC_006146.1 + 164469 0.67 0.880323
Target:  5'- cCAugGAccccagggcccacaUGGCCCUGGGCCaaAGgGaCCc -3'
miRNA:   3'- -GUugCU--------------ACUGGGAUCCGGagUCgC-GG- -5'
28933 5' -56 NC_006146.1 + 162562 0.71 0.678182
Target:  5'- gGACGGUGGuCCCUAucaGCCUCuGCGUg -3'
miRNA:   3'- gUUGCUACU-GGGAUc--CGGAGuCGCGg -5'
28933 5' -56 NC_006146.1 + 161167 0.68 0.848189
Target:  5'- --uCGAggGGCCCUucagGGGCUUCuuugauauguacaggAGCGCCa -3'
miRNA:   3'- guuGCUa-CUGGGA----UCCGGAG---------------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 160357 0.69 0.802853
Target:  5'- -cACGggGAa-CUGGcGUCUCAGCGCCc -3'
miRNA:   3'- guUGCuaCUggGAUC-CGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 159266 0.68 0.84501
Target:  5'- gCAACGcc-GCCacgcGGGCCUCGGgGCCc -3'
miRNA:   3'- -GUUGCuacUGGga--UCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 158447 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 158286 0.69 0.808133
Target:  5'- ---aGGUGGCCUggccugggcugugAGGCCUCgAGgGCCg -3'
miRNA:   3'- guugCUACUGGGa------------UCCGGAG-UCgCGG- -5'
28933 5' -56 NC_006146.1 + 157620 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 157324 0.73 0.546888
Target:  5'- uCAugGAUGAgCCCccGGCCUgcuugcgcagccCGGCGCCc -3'
miRNA:   3'- -GUugCUACU-GGGauCCGGA------------GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 156227 0.66 0.914377
Target:  5'- aGACGcgGGCCCccucGGCCguggacggGGUGCCg -3'
miRNA:   3'- gUUGCuaCUGGGau--CCGGag------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 155868 0.68 0.84501
Target:  5'- cCGGCG--GGCCCU-GGCCa-GGCGCCc -3'
miRNA:   3'- -GUUGCuaCUGGGAuCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 155368 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 155207 0.69 0.808133
Target:  5'- ---aGGUGGCCUggccugggcugugAGGCCUCgAGgGCCg -3'
miRNA:   3'- guugCUACUGGGa------------UCCGGAG-UCgCGG- -5'
28933 5' -56 NC_006146.1 + 154542 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 153043 0.68 0.828669
Target:  5'- cCAGC--UGGCCCUcguAGGUCUUGGUGUCg -3'
miRNA:   3'- -GUUGcuACUGGGA---UCCGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 152290 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 152129 0.69 0.808133
Target:  5'- ---aGGUGGCCUggccugggcugugAGGCCUCgAGgGCCg -3'
miRNA:   3'- guugCUACUGGGa------------UCCGGAG-UCgCGG- -5'
28933 5' -56 NC_006146.1 + 151464 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.