miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 3' -61.5 NC_006146.1 + 101707 0.66 0.758453
Target:  5'- gGGGagagagCAGCGGGGGuuUGGCUc-CUCGGg -3'
miRNA:   3'- -CCCg-----GUCGCCCCCc-ACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 35922 0.66 0.758453
Target:  5'- uGGGCCGuuccuaCGGGcuGGGUGugUgauGUUUCGGa -3'
miRNA:   3'- -CCCGGUc-----GCCC--CCCACugG---UAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 23492 0.66 0.758453
Target:  5'- cGGGCUGGUGggcucgcucuGGGaGGUGcccGCCGUgaaCUCGGg -3'
miRNA:   3'- -CCCGGUCGC----------CCC-CCAC---UGGUA---GAGCC- -5'
28936 3' -61.5 NC_006146.1 + 15119 0.66 0.753026
Target:  5'- aGGGCCAccgagcggcucuucuGCGGcGGGGUcuaCAgcucCUCGGg -3'
miRNA:   3'- -CCCGGU---------------CGCC-CCCCAcugGUa---GAGCC- -5'
28936 3' -61.5 NC_006146.1 + 119957 0.66 0.749389
Target:  5'- aGGUCucGGUGGGGGGUcaggaGACgccucggagacaCAUCUUGGg -3'
miRNA:   3'- cCCGG--UCGCCCCCCA-----CUG------------GUAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 45520 0.66 0.749389
Target:  5'- cGGCCAcgGUGGGGGccugGGCCucCUUGGg -3'
miRNA:   3'- cCCGGU--CGCCCCCca--CUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 101933 0.66 0.743906
Target:  5'- uGGCC-GCGGGGgcGGUGACCGaugagacaacggCGGa -3'
miRNA:   3'- cCCGGuCGCCCC--CCACUGGUaga---------GCC- -5'
28936 3' -61.5 NC_006146.1 + 61836 0.66 0.740233
Target:  5'- gGGGgCAGUGGGGcuGGUG-CCGggacUCcCGGg -3'
miRNA:   3'- -CCCgGUCGCCCC--CCACuGGU----AGaGCC- -5'
28936 3' -61.5 NC_006146.1 + 6113 0.66 0.740233
Target:  5'- aGGCaacgguggaGGCGGuGGGGauccaGACCAUCUCc- -3'
miRNA:   3'- cCCGg--------UCGCC-CCCCa----CUGGUAGAGcc -5'
28936 3' -61.5 NC_006146.1 + 53799 0.66 0.737469
Target:  5'- cGGCCcgcgcggcguccauAGCGGGGGGcUGGaaGagUCGGg -3'
miRNA:   3'- cCCGG--------------UCGCCCCCC-ACUggUagAGCC- -5'
28936 3' -61.5 NC_006146.1 + 139077 0.66 0.73192
Target:  5'- cGGGCCcugguggcGCGGGGGGcuguaacucagugcgGACUAUUccCGGa -3'
miRNA:   3'- -CCCGGu-------CGCCCCCCa--------------CUGGUAGa-GCC- -5'
28936 3' -61.5 NC_006146.1 + 46533 0.66 0.730993
Target:  5'- uGGCCGGUguagggaagGGGGGGUGAU--UCcUGGa -3'
miRNA:   3'- cCCGGUCG---------CCCCCCACUGguAGaGCC- -5'
28936 3' -61.5 NC_006146.1 + 102594 0.66 0.730993
Target:  5'- aGGUCGGgGGgucuaGGGGUGAgCGcUUUCGGa -3'
miRNA:   3'- cCCGGUCgCC-----CCCCACUgGU-AGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 29497 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 26419 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 17185 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 20263 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 14107 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 23341 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 41358 0.66 0.721676
Target:  5'- aGGGCCuGGCGGu-GGUGGCCGUggCUCu- -3'
miRNA:   3'- -CCCGG-UCGCCccCCACUGGUA--GAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.