miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 4551 1.08 0.003448
Target:  5'- cCGCCGACUACCUCCCCCAGCUAUUCAc -3'
miRNA:   3'- -GCGGCUGAUGGAGGGGGUCGAUAAGU- -5'
28936 5' -56 NC_006146.1 + 32786 0.75 0.447775
Target:  5'- aGCCGGCUGCCuaUCCCCgCAGCa----- -3'
miRNA:   3'- gCGGCUGAUGG--AGGGG-GUCGauaagu -5'
28936 5' -56 NC_006146.1 + 42899 0.75 0.4569
Target:  5'- gGCCGACgcuaggGCCUCUguCCCGGCUG-UCAg -3'
miRNA:   3'- gCGGCUGa-----UGGAGG--GGGUCGAUaAGU- -5'
28936 5' -56 NC_006146.1 + 144197 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 150353 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 153431 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 156509 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 147275 0.73 0.552946
Target:  5'- cCGCCucggGGCUGCCUCUCCCGGCc----- -3'
miRNA:   3'- -GCGG----CUGAUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 130872 0.72 0.623618
Target:  5'- aGUCGGCUACggCCCCCAGCa----- -3'
miRNA:   3'- gCGGCUGAUGgaGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 43391 0.71 0.664295
Target:  5'- aGCagCGGCUGCCUCugCCCCGGCUGc--- -3'
miRNA:   3'- gCG--GCUGAUGGAG--GGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 67746 0.71 0.68048
Target:  5'- cCGCCcaGACggaggagccaaagACCUCCCCCAGCUc---- -3'
miRNA:   3'- -GCGG--CUGa------------UGGAGGGGGUCGAuaagu -5'
28936 5' -56 NC_006146.1 + 131370 0.71 0.694561
Target:  5'- aGCCcuuGCgccGCCUCCCCCAGCccaUCAg -3'
miRNA:   3'- gCGGc--UGa--UGGAGGGGGUCGauaAGU- -5'
28936 5' -56 NC_006146.1 + 67528 0.71 0.704558
Target:  5'- gCGCC--CUAUCUCCCCCAcGCUcgUUAu -3'
miRNA:   3'- -GCGGcuGAUGGAGGGGGU-CGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 101642 0.7 0.714494
Target:  5'- cCGCCGuucguCcACCUCCUCCAGCUccUCc -3'
miRNA:   3'- -GCGGCu----GaUGGAGGGGGUCGAuaAGu -5'
28936 5' -56 NC_006146.1 + 69656 0.7 0.753455
Target:  5'- gGCCcGCgguCCUCCUCCAGCUGg--- -3'
miRNA:   3'- gCGGcUGau-GGAGGGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 120314 0.7 0.753455
Target:  5'- uGCgGGuCUGCaacaUCCCCCGGCUcaUCAa -3'
miRNA:   3'- gCGgCU-GAUGg---AGGGGGUCGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 102670 0.7 0.762953
Target:  5'- aGCCG-C-GCCUCCCCC-GCUGUg-- -3'
miRNA:   3'- gCGGCuGaUGGAGGGGGuCGAUAagu -5'
28936 5' -56 NC_006146.1 + 31497 0.7 0.762953
Target:  5'- aGCaGGC-ACCUCCCCCGGCg----- -3'
miRNA:   3'- gCGgCUGaUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 44657 0.69 0.781597
Target:  5'- cCGCCGaACUcACCUCgCCCGGCa----- -3'
miRNA:   3'- -GCGGC-UGA-UGGAGgGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 94508 0.69 0.790724
Target:  5'- cCGUCGGCgcccccggucCCUCCCCCGGCg----- -3'
miRNA:   3'- -GCGGCUGau--------GGAGGGGGUCGauaagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.