miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 817 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 1749 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 2681 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 3613 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 4551 1.08 0.003448
Target:  5'- cCGCCGACUACCUCCCCCAGCUAUUCAc -3'
miRNA:   3'- -GCGGCUGAUGGAGGGGGUCGAUAAGU- -5'
28936 5' -56 NC_006146.1 + 13295 0.66 0.929072
Target:  5'- cCGCCcgcGACUACC-CCCaCguGCUGggCAc -3'
miRNA:   3'- -GCGG---CUGAUGGaGGG-GguCGAUaaGU- -5'
28936 5' -56 NC_006146.1 + 22959 0.67 0.880042
Target:  5'- gGCCGGCUGCUaUCUCCUGGCg----- -3'
miRNA:   3'- gCGGCUGAUGG-AGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 31497 0.7 0.762953
Target:  5'- aGCaGGC-ACCUCCCCCGGCg----- -3'
miRNA:   3'- gCGgCUGaUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 32569 0.67 0.886971
Target:  5'- gGUgGGCUGCauauUCCCgCCAGCUugcaGUUCAc -3'
miRNA:   3'- gCGgCUGAUGg---AGGG-GGUCGA----UAAGU- -5'
28936 5' -56 NC_006146.1 + 32786 0.75 0.447775
Target:  5'- aGCCGGCUGCCuaUCCCCgCAGCa----- -3'
miRNA:   3'- gCGGCUGAUGG--AGGGG-GUCGauaagu -5'
28936 5' -56 NC_006146.1 + 40620 0.66 0.918211
Target:  5'- cCGCCG-CUGCUUCUCCCGcGUUAc--- -3'
miRNA:   3'- -GCGGCuGAUGGAGGGGGU-CGAUaagu -5'
28936 5' -56 NC_006146.1 + 42683 0.67 0.891689
Target:  5'- gGUgGGCUGCCUgaggcuggcagagcCCCCCAGCg----- -3'
miRNA:   3'- gCGgCUGAUGGA--------------GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 42899 0.75 0.4569
Target:  5'- gGCCGACgcuaggGCCUCUguCCCGGCUG-UCAg -3'
miRNA:   3'- gCGGCUGa-----UGGAGG--GGGUCGAUaAGU- -5'
28936 5' -56 NC_006146.1 + 43055 0.67 0.886971
Target:  5'- aCGCCGGCUGCCcaagCCCaCCcuccaggggaGGCUGgaggcggauuUUCAg -3'
miRNA:   3'- -GCGGCUGAUGGa---GGG-GG----------UCGAU----------AAGU- -5'
28936 5' -56 NC_006146.1 + 43391 0.71 0.664295
Target:  5'- aGCagCGGCUGCCUCugCCCCGGCUGc--- -3'
miRNA:   3'- gCG--GCUGAUGGAG--GGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 44657 0.69 0.781597
Target:  5'- cCGCCGaACUcACCUCgCCCGGCa----- -3'
miRNA:   3'- -GCGGC-UGA-UGGAGgGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 51036 0.66 0.900158
Target:  5'- aGCUcGCUgGCCUUCCCCcGCUGUUa- -3'
miRNA:   3'- gCGGcUGA-UGGAGGGGGuCGAUAAgu -5'
28936 5' -56 NC_006146.1 + 55938 0.66 0.929072
Target:  5'- cCGCCcucuCUGCCUCCUCCAGggcacUCAu -3'
miRNA:   3'- -GCGGcu--GAUGGAGGGGGUCgaua-AGU- -5'
28936 5' -56 NC_006146.1 + 56688 0.66 0.92376
Target:  5'- uCGCCGggcuGCUACCcCCUCCGGCc----- -3'
miRNA:   3'- -GCGGC----UGAUGGaGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 58059 0.66 0.918211
Target:  5'- cCGCCGGCUACCUgucggCCCUGcGCUAc--- -3'
miRNA:   3'- -GCGGCUGAUGGAg----GGGGU-CGAUaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.