miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 43055 0.67 0.886971
Target:  5'- aCGCCGGCUGCCcaagCCCaCCcuccaggggaGGCUGgaggcggauuUUCAg -3'
miRNA:   3'- -GCGGCUGAUGGa---GGG-GG----------UCGAU----------AAGU- -5'
28936 5' -56 NC_006146.1 + 102670 0.7 0.762953
Target:  5'- aGCCG-C-GCCUCCCCC-GCUGUg-- -3'
miRNA:   3'- gCGGCuGaUGGAGGGGGuCGAUAagu -5'
28936 5' -56 NC_006146.1 + 94508 0.69 0.790724
Target:  5'- cCGUCGGCgcccccggucCCUCCCCCGGCg----- -3'
miRNA:   3'- -GCGGCUGau--------GGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 144808 0.69 0.808545
Target:  5'- gGCCucCgUGCCUCCCCUcccGGCUGUUUc -3'
miRNA:   3'- gCGGcuG-AUGGAGGGGG---UCGAUAAGu -5'
28936 5' -56 NC_006146.1 + 150338 0.68 0.825734
Target:  5'- gGCCGGCUAgucugugcuCCUCUUCCGGCguuaUCAu -3'
miRNA:   3'- gCGGCUGAU---------GGAGGGGGUCGaua-AGU- -5'
28936 5' -56 NC_006146.1 + 144621 0.68 0.834071
Target:  5'- uGCCGGCc-CCUCCaCCCAGgCUaAUUCc -3'
miRNA:   3'- gCGGCUGauGGAGG-GGGUC-GA-UAAGu -5'
28936 5' -56 NC_006146.1 + 101199 0.68 0.850193
Target:  5'- aCGCUGGuCU-UCUCCCUCAGCgUGUUCc -3'
miRNA:   3'- -GCGGCU-GAuGGAGGGGGUCG-AUAAGu -5'
28936 5' -56 NC_006146.1 + 73662 0.67 0.880042
Target:  5'- aGCCaGCcACCuugugUCCCCCAGCUGg--- -3'
miRNA:   3'- gCGGcUGaUGG-----AGGGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 32569 0.67 0.886971
Target:  5'- gGUgGGCUGCauauUCCCgCCAGCUugcaGUUCAc -3'
miRNA:   3'- gCGgCUGAUGg---AGGG-GGUCGA----UAAGU- -5'
28936 5' -56 NC_006146.1 + 31497 0.7 0.762953
Target:  5'- aGCaGGC-ACCUCCCCCGGCg----- -3'
miRNA:   3'- gCGgCUGaUGGAGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 69656 0.7 0.753455
Target:  5'- gGCCcGCgguCCUCCUCCAGCUGg--- -3'
miRNA:   3'- gCGGcUGau-GGAGGGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 120314 0.7 0.753455
Target:  5'- uGCgGGuCUGCaacaUCCCCCGGCUcaUCAa -3'
miRNA:   3'- gCGgCU-GAUGg---AGGGGGUCGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 32786 0.75 0.447775
Target:  5'- aGCCGGCUGCCuaUCCCCgCAGCa----- -3'
miRNA:   3'- gCGGCUGAUGG--AGGGG-GUCGauaagu -5'
28936 5' -56 NC_006146.1 + 42899 0.75 0.4569
Target:  5'- gGCCGACgcuaggGCCUCUguCCCGGCUG-UCAg -3'
miRNA:   3'- gCGGCUGa-----UGGAGG--GGGUCGAUaAGU- -5'
28936 5' -56 NC_006146.1 + 130872 0.72 0.623618
Target:  5'- aGUCGGCUACggCCCCCAGCa----- -3'
miRNA:   3'- gCGGCUGAUGgaGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 43391 0.71 0.664295
Target:  5'- aGCagCGGCUGCCUCugCCCCGGCUGc--- -3'
miRNA:   3'- gCG--GCUGAUGGAG--GGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 67746 0.71 0.68048
Target:  5'- cCGCCcaGACggaggagccaaagACCUCCCCCAGCUc---- -3'
miRNA:   3'- -GCGG--CUGa------------UGGAGGGGGUCGAuaagu -5'
28936 5' -56 NC_006146.1 + 131370 0.71 0.694561
Target:  5'- aGCCcuuGCgccGCCUCCCCCAGCccaUCAg -3'
miRNA:   3'- gCGGc--UGa--UGGAGGGGGUCGauaAGU- -5'
28936 5' -56 NC_006146.1 + 67528 0.71 0.704558
Target:  5'- gCGCC--CUAUCUCCCCCAcGCUcgUUAu -3'
miRNA:   3'- -GCGGcuGAUGGAGGGGGU-CGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 101642 0.7 0.714494
Target:  5'- cCGCCGuucguCcACCUCCUCCAGCUccUCc -3'
miRNA:   3'- -GCGGCu----GaUGGAGGGGGUCGAuaAGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.