Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28936 | 5' | -56 | NC_006146.1 | + | 43055 | 0.67 | 0.886971 |
Target: 5'- aCGCCGGCUGCCcaagCCCaCCcuccaggggaGGCUGgaggcggauuUUCAg -3' miRNA: 3'- -GCGGCUGAUGGa---GGG-GG----------UCGAU----------AAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 102670 | 0.7 | 0.762953 |
Target: 5'- aGCCG-C-GCCUCCCCC-GCUGUg-- -3' miRNA: 3'- gCGGCuGaUGGAGGGGGuCGAUAagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 94508 | 0.69 | 0.790724 |
Target: 5'- cCGUCGGCgcccccggucCCUCCCCCGGCg----- -3' miRNA: 3'- -GCGGCUGau--------GGAGGGGGUCGauaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 144808 | 0.69 | 0.808545 |
Target: 5'- gGCCucCgUGCCUCCCCUcccGGCUGUUUc -3' miRNA: 3'- gCGGcuG-AUGGAGGGGG---UCGAUAAGu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 150338 | 0.68 | 0.825734 |
Target: 5'- gGCCGGCUAgucugugcuCCUCUUCCGGCguuaUCAu -3' miRNA: 3'- gCGGCUGAU---------GGAGGGGGUCGaua-AGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 144621 | 0.68 | 0.834071 |
Target: 5'- uGCCGGCc-CCUCCaCCCAGgCUaAUUCc -3' miRNA: 3'- gCGGCUGauGGAGG-GGGUC-GA-UAAGu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 101199 | 0.68 | 0.850193 |
Target: 5'- aCGCUGGuCU-UCUCCCUCAGCgUGUUCc -3' miRNA: 3'- -GCGGCU-GAuGGAGGGGGUCG-AUAAGu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 73662 | 0.67 | 0.880042 |
Target: 5'- aGCCaGCcACCuugugUCCCCCAGCUGg--- -3' miRNA: 3'- gCGGcUGaUGG-----AGGGGGUCGAUaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 32569 | 0.67 | 0.886971 |
Target: 5'- gGUgGGCUGCauauUCCCgCCAGCUugcaGUUCAc -3' miRNA: 3'- gCGgCUGAUGg---AGGG-GGUCGA----UAAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 31497 | 0.7 | 0.762953 |
Target: 5'- aGCaGGC-ACCUCCCCCGGCg----- -3' miRNA: 3'- gCGgCUGaUGGAGGGGGUCGauaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 69656 | 0.7 | 0.753455 |
Target: 5'- gGCCcGCgguCCUCCUCCAGCUGg--- -3' miRNA: 3'- gCGGcUGau-GGAGGGGGUCGAUaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 120314 | 0.7 | 0.753455 |
Target: 5'- uGCgGGuCUGCaacaUCCCCCGGCUcaUCAa -3' miRNA: 3'- gCGgCU-GAUGg---AGGGGGUCGAuaAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 32786 | 0.75 | 0.447775 |
Target: 5'- aGCCGGCUGCCuaUCCCCgCAGCa----- -3' miRNA: 3'- gCGGCUGAUGG--AGGGG-GUCGauaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 42899 | 0.75 | 0.4569 |
Target: 5'- gGCCGACgcuaggGCCUCUguCCCGGCUG-UCAg -3' miRNA: 3'- gCGGCUGa-----UGGAGG--GGGUCGAUaAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 130872 | 0.72 | 0.623618 |
Target: 5'- aGUCGGCUACggCCCCCAGCa----- -3' miRNA: 3'- gCGGCUGAUGgaGGGGGUCGauaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 43391 | 0.71 | 0.664295 |
Target: 5'- aGCagCGGCUGCCUCugCCCCGGCUGc--- -3' miRNA: 3'- gCG--GCUGAUGGAG--GGGGUCGAUaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 67746 | 0.71 | 0.68048 |
Target: 5'- cCGCCcaGACggaggagccaaagACCUCCCCCAGCUc---- -3' miRNA: 3'- -GCGG--CUGa------------UGGAGGGGGUCGAuaagu -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 131370 | 0.71 | 0.694561 |
Target: 5'- aGCCcuuGCgccGCCUCCCCCAGCccaUCAg -3' miRNA: 3'- gCGGc--UGa--UGGAGGGGGUCGauaAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 67528 | 0.71 | 0.704558 |
Target: 5'- gCGCC--CUAUCUCCCCCAcGCUcgUUAu -3' miRNA: 3'- -GCGGcuGAUGGAGGGGGU-CGAuaAGU- -5' |
|||||||
28936 | 5' | -56 | NC_006146.1 | + | 101642 | 0.7 | 0.714494 |
Target: 5'- cCGCCGuucguCcACCUCCUCCAGCUccUCc -3' miRNA: 3'- -GCGGCu----GaUGGAGGGGGUCGAuaAGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home