miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2894 3' -55.4 NC_001493.1 + 133788 1.09 0.002941
Target:  5'- uCAAGACCUUUCACGGCGGCACCCAGGc -3'
miRNA:   3'- -GUUCUGGAAAGUGCCGCCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 18234 1.09 0.002941
Target:  5'- uCAAGACCUUUCACGGCGGCACCCAGGc -3'
miRNA:   3'- -GUUCUGGAAAGUGCCGCCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 114165 0.73 0.553221
Target:  5'- cCGGGACCccaUUCGCGGCGcacaugGCCCGGGa -3'
miRNA:   3'- -GUUCUGGa--AAGUGCCGCcg----UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 3093 0.73 0.553221
Target:  5'- -cGGGCUcgUCACGGcCGGUGCCCGGu -3'
miRNA:   3'- guUCUGGaaAGUGCC-GCCGUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 118648 0.73 0.553221
Target:  5'- -cGGGCUcgUCACGGcCGGUGCCCGGu -3'
miRNA:   3'- guUCUGGaaAGUGCC-GCCGUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 18517 0.72 0.604274
Target:  5'- -cGGGCCccUCACGGUGGCcACgCGGGu -3'
miRNA:   3'- guUCUGGaaAGUGCCGCCG-UGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 134072 0.72 0.604274
Target:  5'- -cGGGCCccUCACGGUGGCcACgCGGGu -3'
miRNA:   3'- guUCUGGaaAGUGCCGCCG-UGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 27511 0.71 0.66613
Target:  5'- --uGACCg-UCACGGCGGCcgauaucCCCAGa -3'
miRNA:   3'- guuCUGGaaAGUGCCGCCGu------GGGUCc -5'
2894 3' -55.4 NC_001493.1 + 54746 0.71 0.666131
Target:  5'- -uGGACCUUguugcucuacucUCugGGCGGgGCCCGu- -3'
miRNA:   3'- guUCUGGAA------------AGugCCGCCgUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 5316 0.7 0.716976
Target:  5'- gAGGACg--UgGCGGgGGCACCCGuGGg -3'
miRNA:   3'- gUUCUGgaaAgUGCCgCCGUGGGU-CC- -5'
2894 3' -55.4 NC_001493.1 + 120870 0.7 0.716976
Target:  5'- gAGGACg--UgGCGGgGGCACCCGuGGg -3'
miRNA:   3'- gUUCUGgaaAgUGCCgCCGUGGGU-CC- -5'
2894 3' -55.4 NC_001493.1 + 64368 0.7 0.736863
Target:  5'- gAGGACCc--CACGGCGaaGCCCAGu -3'
miRNA:   3'- gUUCUGGaaaGUGCCGCcgUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 77517 0.69 0.760231
Target:  5'- aCAAGACCcugccauggccaugUUCA-GGCGGUACCCGa- -3'
miRNA:   3'- -GUUCUGGa-------------AAGUgCCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 133533 0.69 0.763108
Target:  5'- cCGAGACCUcccacucgaucaguUUCGgGGCcGCGUCCAGGa -3'
miRNA:   3'- -GUUCUGGA--------------AAGUgCCGcCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 17978 0.69 0.763108
Target:  5'- cCGAGACCUcccacucgaucaguUUCGgGGCcGCGUCCAGGa -3'
miRNA:   3'- -GUUCUGGA--------------AAGUgCCGcCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 44490 0.69 0.765974
Target:  5'- gGAGACCgugcUCGCGGaCGaGCGguUCCGGGg -3'
miRNA:   3'- gUUCUGGaa--AGUGCC-GC-CGU--GGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 100302 0.69 0.765974
Target:  5'- -uGGAUUggagCACgGGCGGC-CCCGGGg -3'
miRNA:   3'- guUCUGGaaa-GUG-CCGCCGuGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 90569 0.69 0.775448
Target:  5'- gCGAGACCg-UCACGaCGGCGCUagAGGa -3'
miRNA:   3'- -GUUCUGGaaAGUGCcGCCGUGGg-UCC- -5'
2894 3' -55.4 NC_001493.1 + 27969 0.69 0.784793
Target:  5'- --cGAUCggggCACGcGCGGCACCCGa- -3'
miRNA:   3'- guuCUGGaaa-GUGC-CGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 8417 0.69 0.784793
Target:  5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3'
miRNA:   3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.