miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2894 3' -55.4 NC_001493.1 + 3093 0.73 0.553221
Target:  5'- -cGGGCUcgUCACGGcCGGUGCCCGGu -3'
miRNA:   3'- guUCUGGaaAGUGCC-GCCGUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 5316 0.7 0.716976
Target:  5'- gAGGACg--UgGCGGgGGCACCCGuGGg -3'
miRNA:   3'- gUUCUGgaaAgUGCCgCCGUGGGU-CC- -5'
2894 3' -55.4 NC_001493.1 + 8417 0.69 0.784793
Target:  5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3'
miRNA:   3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 10599 0.68 0.803053
Target:  5'- uCGGGACCUgacCAC-GCGGCucgAUCCGGGu -3'
miRNA:   3'- -GUUCUGGAaa-GUGcCGCCG---UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 13554 0.67 0.883644
Target:  5'- --cGACCg--CGCGGCcGCACaCGGGg -3'
miRNA:   3'- guuCUGGaaaGUGCCGcCGUGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 14327 0.66 0.921566
Target:  5'- gAGGGCCagggUCACgaGGuCGuCACCCGGGg -3'
miRNA:   3'- gUUCUGGaa--AGUG--CC-GCcGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 14849 0.66 0.915257
Target:  5'- gAAGACCUgcUCACGGCcGUcaucaucACCguGGg -3'
miRNA:   3'- gUUCUGGAa-AGUGCCGcCG-------UGGguCC- -5'
2894 3' -55.4 NC_001493.1 + 17759 0.68 0.837618
Target:  5'- uCGGGGCCgcaaCGCGG-GcGUGCCCGGGa -3'
miRNA:   3'- -GUUCUGGaaa-GUGCCgC-CGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 17978 0.69 0.763108
Target:  5'- cCGAGACCUcccacucgaucaguUUCGgGGCcGCGUCCAGGa -3'
miRNA:   3'- -GUUCUGGA--------------AAGUgCCGcCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 18234 1.09 0.002941
Target:  5'- uCAAGACCUUUCACGGCGGCACCCAGGc -3'
miRNA:   3'- -GUUCUGGAAAGUGCCGCCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 18517 0.72 0.604274
Target:  5'- -cGGGCCccUCACGGUGGCcACgCGGGu -3'
miRNA:   3'- guUCUGGaaAGUGCCGCCG-UGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 19773 0.68 0.843368
Target:  5'- uCAAGACggccccgguaUUUCGCGgaggguacgcucccGCGGCACCgGGGa -3'
miRNA:   3'- -GUUCUGg---------AAAGUGC--------------CGCCGUGGgUCC- -5'
2894 3' -55.4 NC_001493.1 + 25406 0.66 0.89723
Target:  5'- aCAGGGCCaguaGCGGCGacGCACggaauCCAGGu -3'
miRNA:   3'- -GUUCUGGaaagUGCCGC--CGUG-----GGUCC- -5'
2894 3' -55.4 NC_001493.1 + 27511 0.71 0.66613
Target:  5'- --uGACCg-UCACGGCGGCcgauaucCCCAGa -3'
miRNA:   3'- guuCUGGaaAGUGCCGCCGu------GGGUCc -5'
2894 3' -55.4 NC_001493.1 + 27969 0.69 0.784793
Target:  5'- --cGAUCggggCACGcGCGGCACCCGa- -3'
miRNA:   3'- guuCUGGaaa-GUGC-CGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 29302 0.68 0.811951
Target:  5'- -cGGGCCgaaCGCGGgGGCacgGCCCGGa -3'
miRNA:   3'- guUCUGGaaaGUGCCgCCG---UGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 29744 0.66 0.915843
Target:  5'- aGAGGuCCa-UCACGGUGGUcCCgAGGg -3'
miRNA:   3'- gUUCU-GGaaAGUGCCGCCGuGGgUCC- -5'
2894 3' -55.4 NC_001493.1 + 31352 0.67 0.883644
Target:  5'- -cAGACCgcggcCGCGGCGGUAUUCAa- -3'
miRNA:   3'- guUCUGGaaa--GUGCCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 35842 0.66 0.890552
Target:  5'- gAAGACCccucUCGCuGCGGCGCUCGu- -3'
miRNA:   3'- gUUCUGGaa--AGUGcCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 36224 0.66 0.909878
Target:  5'- --cGGCCUg-CGCGGgGGUGCUCAGu -3'
miRNA:   3'- guuCUGGAaaGUGCCgCCGUGGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.