Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2894 | 3' | -55.4 | NC_001493.1 | + | 42040 | 0.67 | 0.869151 |
Target: 5'- cCGAGugCgaucaccccgUUCAUucgugauaggGGCGGC-CCCGGGa -3' miRNA: 3'- -GUUCugGa---------AAGUG----------CCGCCGuGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 10599 | 0.68 | 0.803053 |
Target: 5'- uCGGGACCUgacCAC-GCGGCucgAUCCGGGu -3' miRNA: 3'- -GUUCUGGAaa-GUGcCGCCG---UGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 126153 | 0.68 | 0.803053 |
Target: 5'- uCGGGACCUgacCAC-GCGGCucgAUCCGGGu -3' miRNA: 3'- -GUUCUGGAaa-GUGcCGCCG---UGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 94516 | 0.68 | 0.811952 |
Target: 5'- gCAGGGCCgUUUCugGcGCacgGGUcCCCGGGa -3' miRNA: 3'- -GUUCUGG-AAAGugC-CG---CCGuGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 89628 | 0.68 | 0.817212 |
Target: 5'- --uGACCgaacagucgcgCACGGCGGCGuucUCUAGGg -3' miRNA: 3'- guuCUGGaaa--------GUGCCGCCGU---GGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 94980 | 0.68 | 0.837618 |
Target: 5'- gGGGAUCUacgaGCGGCGGCAgauuCCguGGg -3' miRNA: 3'- gUUCUGGAaag-UGCCGCCGU----GGguCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 114529 | 0.68 | 0.837618 |
Target: 5'- -cGGACagggggUUCAgaugguCcGCGGCACCCAGGg -3' miRNA: 3'- guUCUGga----AAGU------GcCGCCGUGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 93796 | 0.67 | 0.853793 |
Target: 5'- aCGAGGCCgugacCACGGCuGGUuuCUCGGGu -3' miRNA: 3'- -GUUCUGGaaa--GUGCCG-CCGu-GGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 110430 | 0.67 | 0.853793 |
Target: 5'- ---cGCCacacaUCGCGGCGaGCACCuCGGGu -3' miRNA: 3'- guucUGGaa---AGUGCCGC-CGUGG-GUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 27969 | 0.69 | 0.784793 |
Target: 5'- --cGAUCggggCACGcGCGGCACCCGa- -3' miRNA: 3'- guuCUGGaaa-GUGC-CGCCGUGGGUcc -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 123971 | 0.69 | 0.784793 |
Target: 5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3' miRNA: 3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 8417 | 0.69 | 0.784793 |
Target: 5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3' miRNA: 3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 118648 | 0.73 | 0.553221 |
Target: 5'- -cGGGCUcgUCACGGcCGGUGCCCGGu -3' miRNA: 3'- guUCUGGaaAGUGCC-GCCGUGGGUCc -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 54746 | 0.71 | 0.666131 |
Target: 5'- -uGGACCUUguugcucuacucUCugGGCGGgGCCCGu- -3' miRNA: 3'- guUCUGGAA------------AGugCCGCCgUGGGUcc -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 5316 | 0.7 | 0.716976 |
Target: 5'- gAGGACg--UgGCGGgGGCACCCGuGGg -3' miRNA: 3'- gUUCUGgaaAgUGCCgCCGUGGGU-CC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 120870 | 0.7 | 0.716976 |
Target: 5'- gAGGACg--UgGCGGgGGCACCCGuGGg -3' miRNA: 3'- gUUCUGgaaAgUGCCgCCGUGGGU-CC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 77517 | 0.69 | 0.760231 |
Target: 5'- aCAAGACCcugccauggccaugUUCA-GGCGGUACCCGa- -3' miRNA: 3'- -GUUCUGGa-------------AAGUgCCGCCGUGGGUcc -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 17978 | 0.69 | 0.763108 |
Target: 5'- cCGAGACCUcccacucgaucaguUUCGgGGCcGCGUCCAGGa -3' miRNA: 3'- -GUUCUGGA--------------AAGUgCCGcCGUGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 133533 | 0.69 | 0.763108 |
Target: 5'- cCGAGACCUcccacucgaucaguUUCGgGGCcGCGUCCAGGa -3' miRNA: 3'- -GUUCUGGA--------------AAGUgCCGcCGUGGGUCC- -5' |
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2894 | 3' | -55.4 | NC_001493.1 | + | 100302 | 0.69 | 0.765974 |
Target: 5'- -uGGAUUggagCACgGGCGGC-CCCGGGg -3' miRNA: 3'- guUCUGGaaa-GUG-CCGCCGuGGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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