miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 3' -44.6 NC_006146.1 + 7581 1.15 0.018149
Target:  5'- cCAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- -GUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7691 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7744 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7797 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7902 0.98 0.164699
Target:  5'- gCAAAGCUAGGAUAGcAUAUGCUACCCa -3'
miRNA:   3'- -GUUUCGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7849 0.93 0.309475
Target:  5'- cCAcAGCUAuGAUAGUAUACACUACCCa -3'
miRNA:   3'- -GUuUCGAUcCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 43948 0.87 0.554778
Target:  5'- aAAGGCgcGGGAUAGUGUAUGCUACCUg -3'
miRNA:   3'- gUUUCGa-UCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7935 0.86 0.631652
Target:  5'- ----aUUAGGAUAGUAUAUGCUACCCg -3'
miRNA:   3'- guuucGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163368 0.84 0.719252
Target:  5'- ---uGUUAGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- guuuCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7524 0.8 0.871913
Target:  5'- aAAGGUuacacUAGGAUAGcAUAUACUACCCu -3'
miRNA:   3'- gUUUCG-----AUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 161569 0.78 0.932365
Target:  5'- --uAGUUGGG-UAGUAUGUACUACCCg -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163100 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163153 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 163206 0.78 0.937703
Target:  5'- --uAGUUGGG-UAGUGUAUACUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162937 0.78 0.947549
Target:  5'- cUAAAGUUGGGAUAGcAUAUGCUAUCUu -3'
miRNA:   3'- -GUUUCGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8013 0.77 0.960289
Target:  5'- ----aCUAGGAUAGcAUAUGCUACCCc -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 9736 0.76 0.970714
Target:  5'- ----uCUGGGGUAGUAUAUGCUaucACCCg -3'
miRNA:   3'- guuucGAUCCUAUCAUAUGUGA---UGGG- -5'
28940 3' -44.6 NC_006146.1 + 59289 0.75 0.981348
Target:  5'- gAGAGCU-GGAUGGUGUuggACACggugACCUg -3'
miRNA:   3'- gUUUCGAuCCUAUCAUA---UGUGa---UGGG- -5'
28940 3' -44.6 NC_006146.1 + 7642 0.75 0.981348
Target:  5'- ----aUUAGGAUAGcAUAUGCUACCCa -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162108 0.75 0.981348
Target:  5'- --cGGUUGGGAaAGUGUGCACUGgggggccguCCCa -3'
miRNA:   3'- guuUCGAUCCUaUCAUAUGUGAU---------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.