Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28940 | 3' | -44.6 | NC_006146.1 | + | 9655 | 0.68 | 0.999959 |
Target: 5'- ---cGUUGGGAcGGgcccuUAUACUGCCCc -3' miRNA: 3'- guuuCGAUCCUaUCau---AUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7642 | 0.75 | 0.981348 |
Target: 5'- ----aUUAGGAUAGcAUAUGCUACCCa -3' miRNA: 3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 9325 | 0.75 | 0.987192 |
Target: 5'- ---uGCUAuccggcGGGUAGUAcAUACUACCCa -3' miRNA: 3'- guuuCGAU------CCUAUCAUaUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7614 | 0.75 | 0.987192 |
Target: 5'- ----aUUGGGAUAGcAUAUGCUACCCa -3' miRNA: 3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 127557 | 0.73 | 0.994588 |
Target: 5'- cUAAAGCUgaugaccgAGG-UGGUGUcggugcucgaggGCACUACCCa -3' miRNA: 3'- -GUUUCGA--------UCCuAUCAUA------------UGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 161723 | 0.72 | 0.998406 |
Target: 5'- gAAGGCUugGGGGUGGgugGCACggugggaGCCCg -3' miRNA: 3'- gUUUCGA--UCCUAUCauaUGUGa------UGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 8059 | 0.71 | 0.998691 |
Target: 5'- cCAAuaUUAGGAUAGcAUAUGCUACCUa -3' miRNA: 3'- -GUUucGAUCCUAUCaUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 141370 | 0.7 | 0.999554 |
Target: 5'- gCAGGGCUGGGucaag--GCACUuaGCCCu -3' miRNA: 3'- -GUUUCGAUCCuaucauaUGUGA--UGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 34153 | 0.69 | 0.999945 |
Target: 5'- cCGGAGCcccggcgAGGGUGGgggGUGCGCc-CCCa -3' miRNA: 3'- -GUUUCGa------UCCUAUCa--UAUGUGauGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 162108 | 0.75 | 0.981348 |
Target: 5'- --cGGUUGGGAaAGUGUGCACUGgggggccguCCCa -3' miRNA: 3'- guuUCGAUCCUaUCAUAUGUGAU---------GGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 9736 | 0.76 | 0.970714 |
Target: 5'- ----uCUGGGGUAGUAUAUGCUaucACCCg -3' miRNA: 3'- guuucGAUCCUAUCAUAUGUGA---UGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 8013 | 0.77 | 0.960289 |
Target: 5'- ----aCUAGGAUAGcAUAUGCUACCCc -3' miRNA: 3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7691 | 1.13 | 0.026712 |
Target: 5'- gAAAGCUAGGAUAGUAUACACUACCCa -3' miRNA: 3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7744 | 1.13 | 0.026712 |
Target: 5'- gAAAGCUAGGAUAGUAUACACUACCCa -3' miRNA: 3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7797 | 1.13 | 0.026712 |
Target: 5'- gAAAGCUAGGAUAGUAUACACUACCCa -3' miRNA: 3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7902 | 0.98 | 0.164699 |
Target: 5'- gCAAAGCUAGGAUAGcAUAUGCUACCCa -3' miRNA: 3'- -GUUUCGAUCCUAUCaUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7849 | 0.93 | 0.309475 |
Target: 5'- cCAcAGCUAuGAUAGUAUACACUACCCa -3' miRNA: 3'- -GUuUCGAUcCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 43948 | 0.87 | 0.554778 |
Target: 5'- aAAGGCgcGGGAUAGUGUAUGCUACCUg -3' miRNA: 3'- gUUUCGa-UCCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7935 | 0.86 | 0.631652 |
Target: 5'- ----aUUAGGAUAGUAUAUGCUACCCg -3' miRNA: 3'- guuucGAUCCUAUCAUAUGUGAUGGG- -5' |
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28940 | 3' | -44.6 | NC_006146.1 | + | 7524 | 0.8 | 0.871913 |
Target: 5'- aAAGGUuacacUAGGAUAGcAUAUACUACCCu -3' miRNA: 3'- gUUUCG-----AUCCUAUCaUAUGUGAUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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