miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 3' -44.6 NC_006146.1 + 6629 0.67 0.999992
Target:  5'- -uGAGCUAGuGAacacccgGGaccUACGCUGCCCu -3'
miRNA:   3'- guUUCGAUC-CUa------UCau-AUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7524 0.8 0.871913
Target:  5'- aAAGGUuacacUAGGAUAGcAUAUACUACCCu -3'
miRNA:   3'- gUUUCG-----AUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7581 1.15 0.018149
Target:  5'- cCAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- -GUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7614 0.75 0.987192
Target:  5'- ----aUUGGGAUAGcAUAUGCUACCCa -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7642 0.75 0.981348
Target:  5'- ----aUUAGGAUAGcAUAUGCUACCCa -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7691 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7744 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7797 1.13 0.026712
Target:  5'- gAAAGCUAGGAUAGUAUACACUACCCa -3'
miRNA:   3'- gUUUCGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7849 0.93 0.309475
Target:  5'- cCAcAGCUAuGAUAGUAUACACUACCCa -3'
miRNA:   3'- -GUuUCGAUcCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7902 0.98 0.164699
Target:  5'- gCAAAGCUAGGAUAGcAUAUGCUACCCa -3'
miRNA:   3'- -GUUUCGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7935 0.86 0.631652
Target:  5'- ----aUUAGGAUAGUAUAUGCUACCCg -3'
miRNA:   3'- guuucGAUCCUAUCAUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7985 0.68 0.99997
Target:  5'- ----uUUAGGAcAGcAUAUACUACCCa -3'
miRNA:   3'- guuucGAUCCUaUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8013 0.77 0.960289
Target:  5'- ----aCUAGGAUAGcAUAUGCUACCCc -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8059 0.71 0.998691
Target:  5'- cCAAuaUUAGGAUAGcAUAUGCUACCUa -3'
miRNA:   3'- -GUUucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8095 0.67 0.999992
Target:  5'- -------uGGAUAGcAUAUGCUACCCg -3'
miRNA:   3'- guuucgauCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8947 0.67 0.999996
Target:  5'- uGGGGCUGGGGaAGUuuaGCcuGCUGCCa -3'
miRNA:   3'- gUUUCGAUCCUaUCAua-UG--UGAUGGg -5'
28940 3' -44.6 NC_006146.1 + 9325 0.75 0.987192
Target:  5'- ---uGCUAuccggcGGGUAGUAcAUACUACCCa -3'
miRNA:   3'- guuuCGAU------CCUAUCAUaUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 9655 0.68 0.999959
Target:  5'- ---cGUUGGGAcGGgcccuUAUACUGCCCc -3'
miRNA:   3'- guuuCGAUCCUaUCau---AUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 9736 0.76 0.970714
Target:  5'- ----uCUGGGGUAGUAUAUGCUaucACCCg -3'
miRNA:   3'- guuucGAUCCUAUCAUAUGUGA---UGGG- -5'
28940 3' -44.6 NC_006146.1 + 12739 0.67 0.999992
Target:  5'- gGAGGCcaaGGUGGUGcACGCUgaGCCCa -3'
miRNA:   3'- gUUUCGaucCUAUCAUaUGUGA--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.