miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 5' -49 NC_006146.1 + 7028 0.66 0.998325
Target:  5'- aGaGGAUGGCA--UGCUggaauugGCCCGGCa-- -3'
miRNA:   3'- aC-CCUAUCGUauACGA-------UGGGUUGauu -5'
28940 5' -49 NC_006146.1 + 127515 0.66 0.998017
Target:  5'- cGGGGcagaGGCAgccgcUGCUGCCCccGCUAAg -3'
miRNA:   3'- aCCCUa---UCGUau---ACGAUGGGu-UGAUU- -5'
28940 5' -49 NC_006146.1 + 135602 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136902 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 137088 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136995 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135137 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135230 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135323 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135416 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136809 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136624 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135880 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 135973 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136066 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136159 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136252 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136345 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136438 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136531 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.