miRNA display CGI


Results 61 - 80 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 102962 0.69 0.744701
Target:  5'- aGGGcAGCcgcccauccgggACAUACUccacgGUgGGCCGGGCu -3'
miRNA:   3'- aCCUaUCG------------UGUAUGA-----CGgCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 25183 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 22105 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 12872 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 100879 0.69 0.754255
Target:  5'- cGGGUcuCACGgacCUGUCGGCCuGGGUc -3'
miRNA:   3'- aCCUAucGUGUau-GACGGCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 160237 0.68 0.763704
Target:  5'- cUGGGUAGagaACAUgauuuucaguaACaGCCcuGGCCGGGUa -3'
miRNA:   3'- -ACCUAUCg--UGUA-----------UGaCGG--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 49078 0.68 0.763704
Target:  5'- aGGAgGGCugAgGCU-CCGGCUGuGGCu -3'
miRNA:   3'- aCCUaUCGugUaUGAcGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 9739 0.68 0.763704
Target:  5'- gGGGUAGUAUAUGCUaUCacCCGGGCa -3'
miRNA:   3'- aCCUAUCGUGUAUGAcGGccGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 38810 0.68 0.773039
Target:  5'- gGGGU-GCACAU-CUGCagccaGGCCcugagccugGGGCa -3'
miRNA:   3'- aCCUAuCGUGUAuGACGg----CCGG---------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 33111 0.68 0.773039
Target:  5'- cGGGUGGcCGCcgGCggGUUcGCCGGGCc -3'
miRNA:   3'- aCCUAUC-GUGuaUGa-CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 126008 0.68 0.773039
Target:  5'- gGGAgugGGgGCGgugggcuucUGCUGCUgGGCCGGGa -3'
miRNA:   3'- aCCUa--UCgUGU---------AUGACGG-CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 7030 0.68 0.773039
Target:  5'- aGGAUGGCAU--GCUGgaaUUGGCCcGGCa -3'
miRNA:   3'- aCCUAUCGUGuaUGAC---GGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 127155 0.68 0.78225
Target:  5'- cUGGAcGGCGuCAUGCgcgaccacCUGGCCcGGGCg -3'
miRNA:   3'- -ACCUaUCGU-GUAUGac------GGCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 32813 0.68 0.78225
Target:  5'- gGGGU-GCACA-ACccccaGCCGGCCcGGCg -3'
miRNA:   3'- aCCUAuCGUGUaUGa----CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 46954 0.68 0.78225
Target:  5'- aGGGUGccCGCGUAUUucGCCGGCCcGGCc -3'
miRNA:   3'- aCCUAUc-GUGUAUGA--CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 136643 0.68 0.78225
Target:  5'- gGGGU-GCACA-ACccccaGCCGGCCcGGCg -3'
miRNA:   3'- aCCUAuCGUGUaUGa----CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 154680 0.68 0.791329
Target:  5'- cGGggGGCGC-UGCUGCUGGgUGGucuGCg -3'
miRNA:   3'- aCCuaUCGUGuAUGACGGCCgGCC---CG- -5'
28942 3' -57.1 NC_006146.1 + 161735 0.68 0.791329
Target:  5'- gUGGGUGGCACGgugGgaGCCcGCCGuccccgaaagaGGCa -3'
miRNA:   3'- -ACCUAUCGUGUa--UgaCGGcCGGC-----------CCG- -5'
28942 3' -57.1 NC_006146.1 + 127977 0.68 0.791329
Target:  5'- cGGAgcuUGGCGCc-GCUGCUGacaGCCGGGa -3'
miRNA:   3'- aCCU---AUCGUGuaUGACGGC---CGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 65476 0.68 0.800267
Target:  5'- cGGGcuguGCGgGUGCUgaGCUGGCCGGcGUg -3'
miRNA:   3'- aCCUau--CGUgUAUGA--CGGCCGGCC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.