Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 5' | -49.9 | NC_006146.1 | + | 135594 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 135501 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 135408 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 135315 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 135222 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 135129 | 0.74 | 0.851979 |
Target: 5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3' miRNA: 3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 118343 | 0.69 | 0.985785 |
Target: 5'- ---gCCGGCGGGcgcGUgaACAU-CUACCg -3' miRNA: 3'- gauaGGCCGCCCau-CA--UGUAuGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 117431 | 0.66 | 0.997506 |
Target: 5'- aUAUCCGuGaCGGGggcUGCAUACUugUu -3' miRNA: 3'- gAUAGGC-C-GCCCaucAUGUAUGAugG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 101830 | 0.73 | 0.903055 |
Target: 5'- -aGUUCGGCGGGgcccgAGcGCucggGCUGCCg -3' miRNA: 3'- gaUAGGCCGCCCa----UCaUGua--UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 99055 | 0.66 | 0.997506 |
Target: 5'- ---cCCGGCGGGUGucgGCGg--UGCCg -3' miRNA: 3'- gauaGGCCGCCCAUca-UGUaugAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 77314 | 0.7 | 0.977492 |
Target: 5'- ---cCCGGCGGGUcGcGCAUGCccagGCUg -3' miRNA: 3'- gauaGGCCGCCCAuCaUGUAUGa---UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 69675 | 0.66 | 0.998248 |
Target: 5'- ---gCUGGgGGGUGGcAUAUcugaagGCUGCCa -3' miRNA: 3'- gauaGGCCgCCCAUCaUGUA------UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 63012 | 0.69 | 0.987435 |
Target: 5'- -aGUCUGGCGGGUGcccgACGUA--ACCu -3' miRNA: 3'- gaUAGGCCGCCCAUca--UGUAUgaUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 59433 | 0.68 | 0.992501 |
Target: 5'- gUAUgCCGGgGGGUGGUuucacugGCAcgACUggGCCg -3' miRNA: 3'- gAUA-GGCCgCCCAUCA-------UGUa-UGA--UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 57932 | 0.66 | 0.998515 |
Target: 5'- gCUggCCGGCGccgccauGGUGcUGCAUcaccACUGCCa -3' miRNA: 3'- -GAuaGGCCGC-------CCAUcAUGUA----UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 43976 | 0.7 | 0.966086 |
Target: 5'- ----aUGGCGGGUAaUAUAUGCUAUCc -3' miRNA: 3'- gauagGCCGCCCAUcAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 43940 | 0.68 | 0.992501 |
Target: 5'- gUGUuuGaaaaggcGCGGGaUAGUGUAUGCUACCu -3' miRNA: 3'- gAUAggC-------CGCCC-AUCAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 43003 | 0.67 | 0.995235 |
Target: 5'- ---gCCGcCGGGUgagaGGUGCGaggGCUGCCg -3' miRNA: 3'- gauaGGCcGCCCA----UCAUGUa--UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 41707 | 0.72 | 0.921336 |
Target: 5'- ---aCCGGCGGGgGGUGCGgcGCUgugGCCu -3' miRNA: 3'- gauaGGCCGCCCaUCAUGUa-UGA---UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 36173 | 0.67 | 0.99446 |
Target: 5'- ---cCUGGCuGGccUGGUGCAUGCaUGCCu -3' miRNA: 3'- gauaGGCCGcCC--AUCAUGUAUG-AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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